- Transcript BART1_0-u43238.004
- Transcript IDBART1_0-u43238.004
- Gene IDBART1_0-u43238
Exon Structure of BART1_0-u43238.004
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 64215270 | 64214416 | - |
chr6H | 2 | 64215646 | 64215404 | - |
chr6H | 3 | 64216573 | 64216523 | - |
chr6H | 4 | 64217552 | 64217463 | - |
chr6H | 5 | 64219227 | 64219027 | - |
chr6H | 6 | 64219737 | 64219387 | - |
chr6H | 7 | 64219961 | 64219846 | - |
chr6H | 8 | 64220925 | 64220808 | - |
chr6H | 9 | 64221173 | 64221008 | - |
chr6H | 10 | 64222294 | 64221836 | - |
chr6H | 11 | 64223293 | 64223180 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 1.37201 | 0.749706 | 0 |
morex | ETI | 1.62002 | 2.67909 | 2.74782 |
morex | LEA | 2.4621 | 2.57537 | 0.000143347 |
morex | EPI | 0.767451 | 0.880048 | 0.00000104145 |
morex | ROO | 0.511224 | 0.449119 | 0 |
morex | ROO2 | 0.000000110733 | 0.000000239935 | 0.922047 |
morex | NOD | 0 | 4.22126 | 0.0434384 |
morex | RAC | 2.78766 | 3.54345 | 1.27243 |
morex | INF1 | 4.26314 | 2.81301 | 2.31942 |
morex | INF2 | 6.11028 | 2.87173 | 3.20867 |
morex | CAR5 | 1.08223 | 5.46503 | 3.60469 |
morex | CAR15 | 1.90626 | 0 | 0 |
morex | LEM | 6.88487 | 1.9864 | 1.71318 |
morex | LOD | 6.49763 | 4.17022 | 2.16945 |
morex | PAL | 0 | 0 | 3.07422 |
morex | SEN | 1.35648 | 0.000000000912445 | 0.000107401 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g05450.1 | +2 | 0.0 | 731 | 450/750 (60%) | protein|Homeobox domain containing protein, expressed |
TAIR PP10 | AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR |
+2 | 8e-73 | 255 | 164/430 (38%) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769 |
BRACH PP3 | Bradi3g03747.3.p | +2 | 0.0 | 1026 | 560/750 (75%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2764 bp)
>BART1_0-u43238.004 2764 150831_barley_pseudomolecules NNNNNNNNNNGCCCCCGCCGGCTTCCAATTGGAGGAATTCGGATCTCCTCCCCCTCCTCC TCCTCCTCTGCTGGGCTTGCTTGGAGCGGAGATCCACCGGGGCCTCAGCTCTCGTCGGAT GTGATACTATCAAGTTCTGACAATGAATAATTCAGACAAGAAGTCGGTATGCTCCATTCC TAGAAGATCATCAGAACGTAGGAAACCGTCCTCTTCTGAGTTGGTTTCTTCAGCAAAAAG GCCAACTCGCCACAACACCTCCAGCAGTTATAAGCCAGATCATTGTTCTCCTCCCAAGAG AACAGTAAGAACAGTCAGGAATGTTAATCTGGCAAAATATGTAAAGAACAAGTATTATCG TAGTCCTCTGAGCAAGCGGCAGGCTTCAAATGTTGCTACTGGAAAAACTGCAACAGGACC AGTCAGGAGGAGGAACCGGAAACGGAGAAGGCACAACACTGATTGTGACGAGGCAAGTCG CATGGAAAGAAGGGCGAGCTATTTGCTGGTCAAAATAAAAACGGAGCAGAATTTAATAGA TGCATACTCTGGAGATGGCTGGAATGGGCACAGCCGAGAGAAATTAAAGCCAGATAAGGA GCTACAGCGTGCTAAGAAACAGATCATTAAATGCAAAATTGCTATCCGTGATATTATCCA TCAACTTGATTTGTATAGTTCAAGTGGGAGCATGGAAGATTCCGTGATGCCTCCAGATGA GTCTGTTAACCCTGATAATACCATATGTTCAAGATGCAAATCTCCTGAATCAGTTCCCAA CAATAAATTTATCTTCTGTGAAGGGCCCTGCAAAATGGCGTACCATCAGAAATGTTCAGA ACCTCCTCTAGACAAAAGTCTTCCTACTGGTGGTCCTGGATGGCTTTGTAAATTCTGTTT GTGCAAGATGAAAATTTTAGAAGCTGTTAATGCACATTTGGGAATGAGCCTTACAGTGAT GTGTCCCTCTAAAGATATTTTTAAGGAAGCAACTGAACAGATGGACTCTGAGGATGGACT AGGAGAGGATTGGTTATCTGAGTATTCAGGTGATGAGGACTATGACCCTGAAGAAAATGA CTTCACAAGCAGCAGCCTGGATAGTGGTGAAGAAAGGATATCTGATCAGTCCAATTGTTC AGGAAGTCCGCTTTATTCTCCAAACGATGATATTCCAGGCTTTATATCAGCAGATTTCAC TGATGCGGAAGGATTCTACCACACCAATTCAAATTTAGGAATTGATTCTGGGGATGATGA TGCTGCCGAGATGCTTACCTACCAAAGGCCAAAGAAAGAGGTTGATTATAAAAGACTTAA TGAGGAAATGTTTGGAAAGCTGACTGACAATGAAAAGCAGAGTGAAGATGAAGATTGGGG TACTAGTAATAAGAGAAAGAAAAGAAGAGTGGATTCAGCTGGTGTTGGAGTTAAGTCTGC CGAGGGTTTCTCAGATGTAAAATCAAATGAGAAAGTCCAACCGCAGAGGAGAAAACTTTT CAGAATTCCTCCTGAGGCAGTTCAGGTACTACGCAAATCTTTTGCTGAAAGCGAGCTTCC AACCCGGGAGGTGAAAGAGAATCTCTCAACAGAATTGGGTATTTCATTTGAAAAGATTGA CAAGTGGTTCAAAAATACAAGGTGTGCTGCTCTCAGAGATCGGAAGGCTGAAGGAAATAG CCGTGTTGCTGGCCCCAGCAAAAGATCGAGACGGAGTGCAGGGAAATCTGGAAGTTCAGG CAAGGTTGATTCAGTGGACAATTCATATCTTCTTCCCGCGTCTGAAATCATCAGTGTACC TACACATCCACAAGGGATTCCTGAGAGGAAGCCCGAATCAACCAGTAGAACTGTGAGGGG GCGGGTACACGATAAAGGAGCTCCCTTGTGCCTGACCGCCAAAGTCAAGGAGAGTACATC ACCTACAACCAAGCCTGTCTTGAACACACACCCTACTCATCTAGCAGATCGCATCATCAA CACTGAGCATAGAGCTGTCTCTCAGGAGGACACAGGGCCCTCCGATGACCCTTTCTTCGA TGCGATCCTATCCTATCCCACCATCAACACAAGCGACAGAGCTGCCTCTCGGGATGATCC GGTGGCCTTCGAGGACGACCCTTTCCTGGACGTGATGCTAGCAAACCGCGACATCTATAC CGAGGAGAGAGTCGCTTCTCACGAGGACGTGAGGCGGACTTCCAGCGACCAGCCTTTCCT GGATGTGATCCAGAACGTGTGCGGACTCGAGCATAGGCTGCAGAGACTGAAGGGGGACAT GCTATCATCATCAGCAGCACCAGGCGGCGCTGGAACCACAGAGCGCGACCTGCAGAGCCA ACTAGTGGTTCTCGTGCCAACCGCCGAGCTGAAGGACAAATCACAGCCTGGCATCTGAAA TTCCGGGTGCGGATGCGACGCTCCGTTTGCGTGTTGTCGATAGGAGTTACTAAAACATAT AGAAGAAATAGTGTAGAGAAGGAGAAGAGAAAGAAAAGTAGTGGCTCTAGTCTAGGGTTC TAGCCGACAAGGGGCCTCAACCGTGGTCGTTACTGTGTGTCACATTGAAGTGCGTCTTCG TTGTTACTTAGTATACAAGGGCAGTTGTTACTGGTTTTAATGGGTTGGAGTTATATACTT TTCGGGGTTCAAAATGTTTGGTTTGGAACCATGTCGATGTGCAAACTTTGAGTAACCTCA ATTCTCATTTTTTTTCCCATTTTACTAAAAAAAATCAGTTTTACCTGCAAGTGAAAATCC GTAG
Protein Sequence (751 aa)
>BART1_0-u43238.004 751 150831_barley_pseudomolecules MNNSDKKSVCSIPRRSSERRKPSSSELVSSAKRPTRHNTSSSYKPDHCSPPKRTVRTVRN VNLAKYVKNKYYRSPLSKRQASNVATGKTATGPVRRRNRKRRRHNTDCDEASRMERRASY LLVKIKTEQNLIDAYSGDGWNGHSREKLKPDKELQRAKKQIIKCKIAIRDIIHQLDLYSS SGSMEDSVMPPDESVNPDNTICSRCKSPESVPNNKFIFCEGPCKMAYHQKCSEPPLDKSL PTGGPGWLCKFCLCKMKILEAVNAHLGMSLTVMCPSKDIFKEATEQMDSEDGLGEDWLSE YSGDEDYDPEENDFTSSSLDSGEERISDQSNCSGSPLYSPNDDIPGFISADFTDAEGFYH TNSNLGIDSGDDDAAEMLTYQRPKKEVDYKRLNEEMFGKLTDNEKQSEDEDWGTSNKRKK RRVDSAGVGVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKEN LSTELGISFEKIDKWFKNTRCAALRDRKAEGNSRVAGPSKRSRRSAGKSGSSGKVDSVDN SYLLPASEIISVPTHPQGIPERKPESTSRTVRGRVHDKGAPLCLTAKVKESTSPTTKPVL NTHPTHLADRIINTEHRAVSQEDTGPSDDPFFDAILSYPTINTSDRAASRDDPVAFEDDP FLDVMLANRDIYTEERVASHEDVRRTSSDQPFLDVIQNVCGLEHRLQRLKGDMLSSSAAP GGAGTTERDLQSQLVVLVPTAELKDKSQPGI