- Transcript BART1_0-u43238.001
- Transcript IDBART1_0-u43238.001
- Gene IDBART1_0-u43238
Exon Structure of BART1_0-u43238.001
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr6H | 1 | 64215270 | 64214315 | - |
chr6H | 2 | 64215646 | 64215404 | - |
chr6H | 3 | 64216573 | 64216523 | - |
chr6H | 4 | 64217552 | 64217463 | - |
chr6H | 5 | 64219227 | 64219027 | - |
chr6H | 6 | 64219737 | 64219411 | - |
chr6H | 7 | 64219961 | 64219846 | - |
chr6H | 8 | 64220925 | 64220808 | - |
chr6H | 9 | 64221173 | 64221008 | - |
chr6H | 10 | 64222294 | 64221836 | - |
chr6H | 11 | 64223293 | 64223180 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.0792507 | 0.000276675 | 0 |
morex | ETI | 0.0000000023763 | 0.000000257859 | 0.00000000291152 |
morex | LEA | 0.00162027 | 0.00000791969 | 0.00000000917075 |
morex | EPI | 0.0298506 | 0 | 0 |
morex | ROO | 1.39967 | 0.00000296775 | 0 |
morex | ROO2 | 0 | 0 | 0.0000000211854 |
morex | NOD | 0 | 0.00017474 | 0.000000000646212 |
morex | RAC | 0.000000000206208 | 0.000000000588586 | 0.000000000714752 |
morex | INF1 | 0.00236128 | 0.000108006 | 0.00180074 |
morex | INF2 | 0.000000401905 | 0.000000186035 | 0.000000290802 |
morex | CAR5 | 0.00000000645126 | 0.00000271802 | 0.000025217 |
morex | CAR15 | 0.00126424 | 0 | 0 |
morex | LEM | 0.00000589177 | 0.000000000294828 | 0 |
morex | LOD | 0.000000000628071 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0.00000000094272 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g05450.1 | +2 | 0.0 | 713 | 445/750 (59%) | protein|Homeobox domain containing protein, expressed |
TAIR PP10 | AT4G29940 @ ARAPORT AT4G29940.2 @ TAIR |
+2 | 2e-46 | 179 | 89/180 (49%) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769 |
BRACH PP3 | Bradi3g03747.3.p | +2 | 0.0 | 1005 | 554/750 (74%) | pacid=32817691 transcript=Bradi3g03747.3 locus=Bradi3g03747 ID=Bradi3g03747.3.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2841 bp)
>BART1_0-u43238.001 2841 150831_barley_pseudomolecules NNNNNNNNNNGCCCCCGCCGGCTTCCAATTGGAGGAATTCGGATCTCCTCCCCCTCCTCC TCCTCCTCTGCTGGGCTTGCTTGGAGCGGAGATCCACCGGGGCCTCAGCTCTCGTCGGAT GTGATACTATCAAGTTCTGACAATGAATAATTCAGACAAGAAGTCGGTATGCTCCATTCC TAGAAGATCATCAGAACGTAGGAAACCGTCCTCTTCTGAGTTGGTTTCTTCAGCAAAAAG GCCAACTCGCCACAACACCTCCAGCAGTTATAAGCCAGATCATTGTTCTCCTCCCAAGAG AACAGTAAGAACAGTCAGGAATGTTAATCTGGCAAAATATGTAAAGAACAAGTATTATCG TAGTCCTCTGAGCAAGCGGCAGGCTTCAAATGTTGCTACTGGAAAAACTGCAACAGGACC AGTCAGGAGGAGGAACCGGAAACGGAGAAGGCACAACACTGATTGTGACGAGGCAAGTCG CATGGAAAGAAGGGCGAGCTATTTGCTGGTCAAAATAAAAACGGAGCAGAATTTAATAGA TGCATACTCTGGAGATGGCTGGAATGGGCACAGCCGAGAGAAATTAAAGCCAGATAAGGA GCTACAGCGTGCTAAGAAACAGATCATTAAATGCAAAATTGCTATCCGTGATATTATCCA TCAACTTGATTTGTATAGTTCAAGTGGGAGCATGGAAGATTCCGTGATGCCTCCAGATGA GTCTGTTAACCCTGATAATACCATATGTTCAAGATGCAAATCTCCTGAATCAGTTCCCAA CAATAAATTTATCTTCTGTGAAGGGCCCTGCAAAATGGCGTACCATCAGAAATGTTCAGA ACCTCCTCTAGACAAAAGTCTTCCTACTGGTGGTCCTGGATGGCTTTGTAAATTCTGTTT GTGCAAGATGAAAATTTTAGAAGCTGTTAATGCACATTTGGGAATGAGCCTTACAGTGAT GTGTCCCTCTAAAGATATTTTTAAGGAAGCAACTGAACAGATGGACTCTGAGGATGGACT AGGAGAGGATTGGTTATCTGAGTATTCAGGTGATGAGGACTATGACCCTGAAGAAAATGA CTTCACAAGCAGCAGCCTGGATAGTGGTGAAGAAAGGATATCTGATCAGTCCAATTGTTC AGGAAGTCCGCTTTATTCTCCAAACGATGATATTCCAGGCTTTATATCAGCAGATTTCAC TGATGCGGAAGGATTCTACCACACCAATTCAAATTTAGGAATTGATTCTGGGGATGATGA TGCTGCCGAGATGCTTACCTACCAAAGGCCAAAGAAAGAGGAAATGTTTGGAAAGCTGAC TGACAATGAAAAGCAGAGTGAAGATGAAGATTGGGGTACTAGTAATAAGAGAAAGAAAAG AAGAGTGGATTCAGCTGGTGTTGGAGTTAAGTCTGCCGAGGGTTTCTCAGATGTAAAATC AAATGAGAAAGTCCAACCGCAGAGGAGAAAACTTTTCAGAATTCCTCCTGAGGCAGTTCA GGTACTACGCAAATCTTTTGCTGAAAGCGAGCTTCCAACCCGGGAGGTGAAAGAGAATCT CTCAACAGAATTGGGTATTTCATTTGAAAAGATTGACAAGTGGTTCAAAAATACAAGGTG TGCTGCTCTCAGAGATCGGAAGGCTGAAGGAAATAGCCGTGTTGCTGGCCCCAGCAAAAG ATCGAGACGGAGTGCAGGGAAATCTGGAAGTTCAGGCAAGGTTGATTCAGTGGACAATTC ATATCTTCTTCCCGCGTCTGAAATCATCAGTGTACCTACACATCCACAAGGGATTCCTGA GAGGAAGCCCGAATCAACCAGTAGAACTGTGAGGGGGCGGGTACACGATAAAGGAGCTCC CTTGTGCCTGACCGCCAAAGTCAAGGAGAGTACATCACCTACAACCAAGCCTGTCTTGAA CACACACCCTACTCATCTAGCAGATCGCATCATCAACACTGAGCATAGAGCTGTCTCTCA GGAGGACACAGGGCCCTCCGATGACCCTTTCTTCGATGCGATCCTATCCTATCCCACCAT CAACACAAGCGACAGAGCTGCCTCTCGGGATGATCCGGTGGCCTTCGAGGACGACCCTTT CCTGGACGTGATGCTAGCAAACCGCGACATCTATACCGAGGAGAGAGTCGCTTCTCACGA GGACGTGAGGCGGACTTCCAGCGACCAGCCTTTCCTGGATGTGATCCAGAACGTGTGCGG ACTCGAGCATAGGCTGCAGAGACTGAAGGGGGACATGCTATCATCATCAGCAGCACCAGG CGGCGCTGGAACCACAGAGCGCGACCTGCAGAGCCAACTAGTGGTTCTCGTGCCAACCGC CGAGCTGAAGGACAAATCACAGCCTGGCATCTGAAATTCCGGGTGCGGATGCGACGCTCC GTTTGCGTGTTGTCGATAGGAGTTACTAAAACATATAGAAGAAATAGTGTAGAGAAGGAG AAGAGAAAGAAAAGTAGTGGCTCTAGTCTAGGGTTCTAGCCGACAAGGGGCCTCAACCGT GGTCGTTACTGTGTGTCACATTGAAGTGCGTCTTCGTTGTTACTTAGTATACAAGGGCAG TTGTTACTGGTTTTAATGGGTTGGAGTTATATACTTTTCGGGGTTCAAAATGTTTGGTTT GGAACCATGTCGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTTTTCCCATTTTA CTAAAAAAAATCAGTTTTACCTGCAAGTGAAAATCCGTAGATTCATTTATCGATTTTTGG GGCGAGATTCAGTTATCGTTATTGCTACTGAGCTAGTATGATATCGCTAGGCAATTCATC TATTCACTCTCTCGTGCAGCT
Protein Sequence (743 aa)
>BART1_0-u43238.001 743 150831_barley_pseudomolecules MNNSDKKSVCSIPRRSSERRKPSSSELVSSAKRPTRHNTSSSYKPDHCSPPKRTVRTVRN VNLAKYVKNKYYRSPLSKRQASNVATGKTATGPVRRRNRKRRRHNTDCDEASRMERRASY LLVKIKTEQNLIDAYSGDGWNGHSREKLKPDKELQRAKKQIIKCKIAIRDIIHQLDLYSS SGSMEDSVMPPDESVNPDNTICSRCKSPESVPNNKFIFCEGPCKMAYHQKCSEPPLDKSL PTGGPGWLCKFCLCKMKILEAVNAHLGMSLTVMCPSKDIFKEATEQMDSEDGLGEDWLSE YSGDEDYDPEENDFTSSSLDSGEERISDQSNCSGSPLYSPNDDIPGFISADFTDAEGFYH TNSNLGIDSGDDDAAEMLTYQRPKKEEMFGKLTDNEKQSEDEDWGTSNKRKKRRVDSAGV GVKSAEGFSDVKSNEKVQPQRRKLFRIPPEAVQVLRKSFAESELPTREVKENLSTELGIS FEKIDKWFKNTRCAALRDRKAEGNSRVAGPSKRSRRSAGKSGSSGKVDSVDNSYLLPASE IISVPTHPQGIPERKPESTSRTVRGRVHDKGAPLCLTAKVKESTSPTTKPVLNTHPTHLA DRIINTEHRAVSQEDTGPSDDPFFDAILSYPTINTSDRAASRDDPVAFEDDPFLDVMLAN RDIYTEERVASHEDVRRTSSDQPFLDVIQNVCGLEHRLQRLKGDMLSSSAAPGGAGTTER DLQSQLVVLVPTAELKDKSQPGI