- Transcript BART1_0-u35917.006
- Transcript IDBART1_0-u35917.006
- Gene IDBART1_0-u35917
Exon Structure of BART1_0-u35917.006
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr5H | 1 | 428280957 | 428280791 | + |
chr5H | 2 | 428281973 | 428281841 | + |
chr5H | 3 | 428282429 | 428282078 | + |
chr5H | 4 | 428282708 | 428282511 | + |
chr5H | 5 | 428283382 | 428283299 | + |
chr5H | 6 | 428283709 | 428283628 | + |
chr5H | 7 | 428283911 | 428283785 | + |
chr5H | 8 | 428284510 | 428284091 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.971179 | 0.747268 | 0.279534 |
morex | ETI | 0.00000000697194 | 0.228368 | 0.00679351 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 2.2295 | 1.91497 | 0.13846 |
morex | ROO | 0.000000623082 | 1.65432 | 1.69548 |
morex | ROO2 | 2.3075 | 0.000000475226 | 0 |
morex | NOD | 0.826768 | 1.25377 | 2.78926 |
morex | RAC | 0.00735894 | 0.0000126516 | 0 |
morex | INF1 | 5.04911 | 2.60354 | 1.49931 |
morex | INF2 | 15.5711 | 9.19739 | 13.2122 |
morex | CAR5 | 6.79525 | 0.0955826 | 3.01769 |
morex | CAR15 | 3.42964 | 0.000000259291 | 2.71129 |
morex | LEM | 0 | 0 | 0.0000000263018 |
morex | LOD | 0 | 0.593122 | 0 |
morex | PAL | 0 | 1.62902 | 0.588607 |
morex | SEN | 1.96643 | 0 | 0.655447 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os09g12800.1 | +1 | 1e-100 | 184 | 97/125 (78%) | protein|zinc finger Ran-binding domain-containing protein 2, putative, expressed |
TAIR PP10 | AT1G50300 @ ARAPORT AT1G50300.1 @ TAIR |
+1 | 1e-63 | 143 | 78/125 (62%) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372 |
BRACH PP3 | Bradi1g19280.1.p | +1 | 2e-85 | 187 | 102/125 (82%) | pacid=32805605 transcript=Bradi1g19280.1 locus=Bradi1g19280 ID=Bradi1g19280.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1563 bp)
>BART1_0-u35917.006 1563 150831_barley_pseudomolecules GCCATCCCCAAGCACGCAGTGAGCGCTGAGATCCGCCCAAACCTAGCGCCGTCGCGGCTT CTCAACCACGCGGCCGCCGCCGCGTTCCCGTCGGCAGAGCACGAGGCGCGCGGTCCTCCG CGCACGCCTTCGATCCGCGCCGTCAACCTCGGCGCATCCCGGACTAGATGGCTGGATATA TGTCTCGCGGACCCCCAAATGGCTCTATTTATGTATGCAATCTGCCTCCTGGAACTGATG AGACCATGTTGGCTGAATATTTTGGCACCATAGGGTTGCTAAAGGTATGGGTCTTACCAG AAGGACAAAAGGACTGGCCACCCAAAGATTTGGATATACAGGGACAAAGTTACAAATGAA CCAAAGGGTGATGCAACAGTCACCTATGAAGATCCCCATGCTGCTTCAGCTGCTGTGGAA TGGTTCAACAATAAGGATTTCCATGGAAGCATCATCCAGGTTCACATAGCTGAGTCAAAA AACAAAGACACAGTTGATAACTTCACCAATGTGAGCGTCGATGCTGAGATTGTTGGACAA GATGAATTGGATAACGGGTCAGGCAGGGGTAGAGGACGTGGTGATGGTCCAGCAAAAGCT TGGCAGCAAGATGGAGATTGGATGTGTCCAAATACAAGGTCTGTTACGATTGCTGTGGCA ATGTAAATTTTGCCTTCCGTGGTGTGTGTAATCGTTGTGGAGCCTCTCGCCCTGCTGGTG TTAGTGGATCAGGTGGTGGTGGTGGTAGGGGTAGAGGCCGTGGTAGTGATGATGCAAGAG GCAGTCGTGCTGCTGCTGCTGTTGGTGGTCCTCCTGGGCTGTTTGGTCCTAATGATTGGC CATGTACGATGTGTGGCAATGTAAACTGGGCCAAGCGGACCAAATGTAATGTCTGTAACA CCTCTAGGCCAGGTCACAATGAAGGTGGTGTGAGAGGTGGCCGGGGTGGCGGCTTTAAAG AACTTGATGAAGAAGAACTAGAAGAAGTACGGAGGCGCCGGAAAGAAGCTGAGGAGGATG ATGGAGAAATGTATGATGAATTTGGTAACCTGAAAAAGAAGTTCCGTGCTAAGTCACATC AAACTGAGAGTACACCAACTCTTCCTGGGTCTGGACGTGCTGGATGGGAAGTTGAGCACC GTGGTTCCACTGAGAGAGAAGGCCGAGAGAGGAGCAGAGATCGGGGCAGGGACGACTACG ATGAAAGGGAAAGCAAGAACAGAGACAGAGGTTCTCATGGAAGAGAGCGGCGCCGTAGCC GAAGCAGGAGCAGAGACCGCGAGAAGGAGAGGGGGAGGGACAGGGGCAGAGATCGTGGCA ACGAGAGAAGCTGGGAGCGCGGCACTGATCGTGAACGTGATCGCTACAGATGATATGTCA GGAGTTTTGTCATGTTTGCTTGCCACTTTTCGGTTTTCTGAACCTTTTGTTATGCTGTTG GAGAGCTGTGGTGTATCACACTGTTATCATTAACATGGGACAAGCTTATTATGTTTGGGT CTAAAGTTCTCAAAACAGACCGGATCGATGGGTCGTCAGATCATCTGGTACAACGGACCC ATC
Protein Sequence (174 aa)
>BART1_0-u35917.006 174 150831_barley_pseudomolecules MCGNVNWAKRTKCNVCNTSRPGHNEGGVRGGRGGGFKELDEEELEEVRRRRKEAEEDDGE MYDEFGNLKKKFRAKSHQTESTPTLPGSGRAGWEVEHRGSTEREGRERSRDRGRDDYDER ESKNRDRGSHGRERRRSRSRSRDREKERGRDRGRDRGNERSWERGTDRERDRYR