- Transcript BART1_0-u35721.003
- Transcript IDBART1_0-u35721.003
- Gene IDBART1_0-u35721
Exon Structure of BART1_0-u35721.003
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr5H | 1 | 405760512 | 405760019 | + |
chr5H | 2 | 405761523 | 405761364 | + |
chr5H | 3 | 405762633 | 405762486 | + |
chr5H | 4 | 405762807 | 405762730 | + |
chr5H | 5 | 405763442 | 405763358 | + |
chr5H | 6 | 405765225 | 405763535 | + |
chr5H | 7 | 405766075 | 405765455 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.396783 | 0.585387 | 0.301766 |
morex | ETI | 0.524498 | 0.545462 | 0.520768 |
morex | LEA | 0.6165 | 0.226369 | 0.297714 |
morex | EPI | 0.439126 | 0.586251 | 0.0497723 |
morex | ROO | 0.358403 | 0.421826 | 0.173225 |
morex | ROO2 | 0.645511 | 0.46033 | 0.84198 |
morex | NOD | 2.75378 | 1.57846 | 0.405604 |
morex | RAC | 1.61012 | 1.21956 | 1.03544 |
morex | INF1 | 0.408489 | 0.153959 | 0.317754 |
morex | INF2 | 0.532207 | 0.247027 | 0.287556 |
morex | CAR5 | 0.684514 | 0.777383 | 0.860053 |
morex | CAR15 | 0.0877181 | 0.328454 | 0.0513237 |
morex | LEM | 1.31244 | 0.677613 | 1.50709 |
morex | LOD | 1.03375 | 0.997404 | 1.07109 |
morex | PAL | 1.68306 | 1.81607 | 2.2051 |
morex | SEN | 0.213482 | 0.51142 | 0.559789 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g21250.2 | +3 | 1e-93 | 297 | 171/183 (93%) | protein|clathrin adaptor complex small chain domain containing protein, expressed |
TAIR PP10 | AT3G09800 @ ARAPORT AT3G09800.1 @ TAIR |
+3 | 3e-68 | 226 | 127/178 (71%) | Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179 |
BRACH PP3 | Bradi4g08770.4.p | +3 | 3e-98 | 309 | 178/183 (97%) | pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3277 bp)
>BART1_0-u35721.003 3277 150831_barley_pseudomolecules CAGTTTTTGAGCCAATTGGGCTGGGCCAGCGGGCCTGTTGGAGTAGCTAAACTAACCAGC TCGTCCATTTCCGCTCGCCTAATCCCTCCCGTCTTTCTCTACACTCGTCTGCTGCATCTC AGATCTCGCGGGCACCAACAAACCAAAGCAAAGCTCTCCCGCTGTCCCGATCACTCTCCC TTCCAGGTAACTCCTCCTCTCTAGATCTCCCCCACCTCCATCCTCGGCAAGTCTCAGCTG ATTAATCCCATGCGCGCGTTCGCTACCTGTGATCCGCGCGTCCGTCAATCATCTCGACAT CTTTCGTTGCATGGTTTTCAGCCCGGATCTGACGAGAACGGGCCGTTCAGATCCGAGCTG TGTTATCGCCATTTGGTTTTGAGCCGCTTCTGTTGATCTTACCTGTCTAGGTGCGTTTCT TTCTTCGGCAGGAAGCTTGGACCGGAGGAAGGTGCTGAGAGGGCGGAAAGGAGGCCATGG GGGAATTCTCCAAGGAATCTTGCCCGTCTGTGAAGAACATTTTGCTACTGGATTCTGAGG GAAAGCGCGTTGCTGTGAAGTACTTCTCGGATGATTGGCCGAACAACGCATCTAGGTTGA CCTTTGAAAAGTCCATTTTTACTAAAACTCTGAAGACAAATGCACGCTCAGAAGCTGAGA TAACATTGCTTGATGGTAATATTGTTGTTTACAAGTTTGTACAAGACCTTCACTTCTTCG TCACTGCCGGAGATGATGAGAATGAGCTAATCATAGCAAATGTGCTACAGGGTTTTGCTG ATTCGGTTGGTCTTCTACTCAGGGGTGACGTTGAGAAGAGGACTGCACTTGAGAACTTGG ACTTGATACTTCTCTGCATTGATGAGATTATTGATGGCGGCATAATTCTTGAAACAGATG CGAATACCATTGCGGGGAAGGTTGCAACCAATGCTGCTGACGGTTCTGTTCCCTTCTCTG AGCAGACAATATCCCAAGCTCTGGCCACAGCCAGGGAACACTTTGCAAGATCTCTTCTGA AGTGAGAAACCACTGCTTCTTCTGTCACCCCTGTTACAACTTGTGTGTGTTTGAGGTCTG GCTACTATGCTATAGGCCTGGTAGCGGTCACTTAACCAGAAGCGCAACTGTGACAGACAG ATTTGTCTGGATTCTTCTTAAATGATATGTAATACTATTTTCTCGTCAAATGCATGCTGC GTGTCGTACATTTTCTGGAGGTATAGAGAAATAATTTTTGACGTTAATCCAATTTCTGCT AAATAACACTCTTCTCAAACCGGAAAGGGCGGATATCGCTTCAACTTTTTTTTTTTTTTT TTGCCTTTCGTTTATTTCTTTACAAGAATTATGTGTGTTCCCAAGCATGAGCCAGAAGTG GCCTTATTGATGAAGCGTTATTGCTAGGGGTGTTATGTTAGGAGATGAACCTCTGAAGTC TTATAGGCAGCCCAAATGTGTGCAAGAGGGATGTTTAGCCTCCCGTACAATAGTCATTGA GACAAGTGCCGAATATTCTATGTTAGCCTTCACGGGAGAAAAAAATGAAATTAAAGGGAC CAGAGGAAAATTGAAGGAAGAACAACGAAAGGGGTTTGTCCCCAGGGCTGTGAAGTTCAG ATCTACCACCCCATCTCTGTAAAGTTATGGTTCCACCATCTTTGATGAGTTTATTCTAAT CCTTACCTTTTGCAACCCTAAATCTTACTGTTGTCATCTAAGACAGTGATATCTTAATGC ATGAAAGCCTCTAAAGCTACTTAGAGAAGAACCTCTAGTGTCCCACATTTGAATGGCTTC ATCTAGTGGGTTTTACCCTAATTTAGGGAGTTTCCCACGTTAATATTTGGTGTATATGTG TGTTTATATTGATGTTACATTTTTGTAGAAGAATGTCTAGAAGCACTTAGTACTTGTCCT AGATATGTGTTGGAAGCACTCAGGGAGAAAAGAAAGTACTTCCGCTCGCTGCTTGCATGA CCGCACAAGGCAGCTGAGGCAAGAACAGAATTCAGAAAGGTGCGCTCCTGCCCTGCGCAC CGCGTCGGCCGTCACTCCGGCGTCGGCGGCCACCAGTCTCGCCGCTCCCCACTCCAGGGA CGGCGCCTACCTCCCGCTCCTAGGTGCCATGGCCTCTAGGGTCTTCCTGTCCAGGCCCCT CTCGCTGGAGCCCGACTCCCCCCCGCAGTCTTCGCCAAGATCCCGTTGCATGGTCGCGGC CTCAGCTCAGATCTCTCATCGTGCCGTAGATCCTGGGCACCGCCTTCGGTCCGCTGACCG CTCGTGCAGGGTGGCGGCACGGGGGCCTCTTGCGCCCCCACTCATCCTCCGGCGAATGGT GGGTGGCAGACCAAGATGGGTCGTCGCCCGCGGGCTCCGCCTGTCCGTGCCCCACCTGTG CGACGTCGGCGCCTGGCGGGGCGGCCCCGTGCACTGCCGGCCCCTCGACCGCCGCCCTCC TCAAGGCCACCCCCGAAGCTTCATGGATGCTGCTACAACTGCAGGAGTGATGGGCATATC TATGTCGACTGCACGAATCCTACGTTCCGTGTCCCGGTGCCGTGGGGCCGGTCACACGTC GCGCGGGTTTACGTGTCCCCGCAGCCCCTCTCCGGTGGAGAAGCCGTCGCGTCCCCCGCC GGCCCTCCGCTCTAAGGTTTACCCTACCAAACGAATTTCAAATGCCACAAAACTTTAATA TGATTTTTTCTGGACTATATGAAGACCTGCAAGCATCAGAAGTGGACGAGAGGCCGAACG AGGTAGGCACAAGCCAACAGGGCGCGGCCGCGCCCTAATGACTTGTGCCCCCCTAGATGC CTCCCGCCGTCCCTCTCTGACCTATAAATTCACAAATATTCCGATGCACTCCCGAAACAC TTTTTCCGCCGCCGCAAGTCTCTGTTCTGACGGAAGGCCATCTAAACCTCCATTCCGGCG ATCTGTCGGAGGGGAGATCAGTCACGGAGGGCCTCTACATCAACCTTGTTGCCCTCACCG TGATGTGTGAGTAGTTTACCACATACCTACGGGTCCGTAGGCAGTACCTAGATGACAATC TCTCTCTCTTATGATCTTCAATACCATGTTCATCGCATCTTCGCTTTGATCTATCCGATG TAATCACTATGTATGGTGTGTTTGTTGGGGTCCGATGAATTGTGGGTTTATGTTCAGATT ATTCATGAAAAGTATTTGAGTCATCTCTGATTATTATGATTCTTAATTGCATGATCATCA TAGCTTCATAATGCTCTTCGATCTATTGAGATAGTTT
Protein Sequence (257 aa)
>BART1_0-u35721.003 257 150831_barley_pseudomolecules MCWKHSGRKESTSARCLHDRTRQLRQEQNSERCAPALRTASAVTPASAATSLAAPHSRDG AYLPLLGAMASRVFLSRPLSLEPDSPPQSSPRSRCMVAASAQISHRAVDPGHRLRSADRS CRVAARGPLAPPLILRRMVGGRPRWVVARGLRLSVPHLCDVGAWRGGPVHCRPLDRRPPQ GHPRSFMDAATTAGVMGISMSTARILRSVSRCRGAGHTSRGFTCPRSPSPVEKPSRPPPA LRSKVYPTKRISNATKL