- Transcript BART1_0-u35721.001
- Transcript IDBART1_0-u35721.001
- Gene IDBART1_0-u35721
Exon Structure of BART1_0-u35721.001
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr5H | 1 | 405760204 | 405759987 | + |
chr5H | 2 | 405760512 | 405760450 | + |
chr5H | 3 | 405761523 | 405761364 | + |
chr5H | 4 | 405762633 | 405762486 | + |
chr5H | 5 | 405762807 | 405762730 | + |
chr5H | 6 | 405763442 | 405763358 | + |
chr5H | 7 | 405766076 | 405763535 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.773187 | 0.89566 | 0.711145 |
morex | ETI | 0.277749 | 0.44599 | 0.396074 |
morex | LEA | 0.862764 | 0 | 0 |
morex | EPI | 0.606072 | 0.738131 | 0.660032 |
morex | ROO | 0.814583 | 0.86598 | 0 |
morex | ROO2 | 0.371821 | 0.310043 | 0.494453 |
morex | NOD | 1.18025 | 0.0826579 | 0.679366 |
morex | RAC | 2.16619 | 2.95257 | 2.86653 |
morex | INF1 | 1.63475 | 1.31853 | 1.48138 |
morex | INF2 | 1.93706 | 2.5384 | 3.52796 |
morex | CAR5 | 0.99715 | 1.64428 | 0.831573 |
morex | CAR15 | 0 | 0.250017 | 0 |
morex | LEM | 0.0911913 | 0.557227 | 0.423614 |
morex | LOD | 1.69557 | 3.10016 | 1.64536 |
morex | PAL | 0.334847 | 0.160117 | 0.637823 |
morex | SEN | 0.175651 | 0.221654 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os02g21250.2 | +3 | 1e-93 | 297 | 171/183 (93%) | protein|clathrin adaptor complex small chain domain containing protein, expressed |
TAIR PP10 | AT3G09800 @ ARAPORT AT3G09800.1 @ TAIR |
+3 | 3e-68 | 226 | 127/178 (71%) | Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179 |
BRACH PP3 | Bradi4g08770.4.p | +3 | 3e-98 | 309 | 178/183 (97%) | pacid=32783612 transcript=Bradi4g08770.4 locus=Bradi4g08770 ID=Bradi4g08770.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3294 bp)
>BART1_0-u35721.001 3294 150831_barley_pseudomolecules CTCAGTTTTTGGCTATGGTATGTGGCCCGTCTCAGTTTTTGAGCCAATTGGGCTGGGCCA GCGGGCCTGTTGGAGTAGCTAAACTAACCAGCTCGTCCATTTCCGCTCGCCTAATCCCTC CCGTCTTTCTCTACACTCGTCTGCTGCATCTCAGATCTCGCGGGCACCAACAAACCAAAG CAAAGCTCTCCCGCTGTCCCGATCACTCTCCCTTCCAGGAAGCTTGGACCGGAGGAAGGT GCTGAGAGGGCGGAAAGGAGGCCATGGGGGAATTCTCCAAGGAATCTTGCCCGTCTGTGA AGAACATTTTGCTACTGGATTCTGAGGGAAAGCGCGTTGCTGTGAAGTACTTCTCGGATG ATTGGCCGAACAACGCATCTAGGTTGACCTTTGAAAAGTCCATTTTTACTAAAACTCTGA AGACAAATGCACGCTCAGAAGCTGAGATAACATTGCTTGATGGTAATATTGTTGTTTACA AGTTTGTACAAGACCTTCACTTCTTCGTCACTGCCGGAGATGATGAGAATGAGCTAATCA TAGCAAATGTGCTACAGGGTTTTGCTGATTCGGTTGGTCTTCTACTCAGGGGTGACGTTG AGAAGAGGACTGCACTTGAGAACTTGGACTTGATACTTCTCTGCATTGATGAGATTATTG ATGGCGGCATAATTCTTGAAACAGATGCGAATACCATTGCGGGGAAGGTTGCAACCAATG CTGCTGACGGTTCTGTTCCCTTCTCTGAGCAGACAATATCCCAAGCTCTGGCCACAGCCA GGGAACACTTTGCAAGATCTCTTCTGAAGTGAGAAACCACTGCTTCTTCTGTCACCCCTG TTACAACTTGTGTGTGTTTGAGGTCTGGCTACTATGCTATAGGCCTGGTAGCGGTCACTT AACCAGAAGCGCAACTGTGACAGACAGATTTGTCTGGATTCTTCTTAAATGATATGTAAT ACTATTTTCTCGTCAAATGCATGCTGCGTGTCGTACATTTTCTGGAGGTATAGAGAAATA ATTTTTGACGTTAATCCAATTTCTGCTAAATAACACTCTTCTCAAACCGGAAAGGGCGGA TATCGCTTCAACTTTTTTTTTTTTTTTTTGCCTTTCGTTTATTTCTTTACAAGAATTATG TGTGTTCCCAAGCATGAGCCAGAAGTGGCCTTATTGATGAAGCGTTATTGCTAGGGGTGT TATGTTAGGAGATGAACCTCTGAAGTCTTATAGGCAGCCCAAATGTGTGCAAGAGGGATG TTTAGCCTCCCGTACAATAGTCATTGAGACAAGTGCCGAATATTCTATGTTAGCCTTCAC GGGAGAAAAAAATGAAATTAAAGGGACCAGAGGAAAATTGAAGGAAGAACAACGAAAGGG GTTTGTCCCCAGGGCTGTGAAGTTCAGATCTACCACCCCATCTCTGTAAAGTTATGGTTC CACCATCTTTGATGAGTTTATTCTAATCCTTACCTTTTGCAACCCTAAATCTTACTGTTG TCATCTAAGACAGTGATATCTTAATGCATGAAAGCCTCTAAAGCTACTTAGAGAAGAACC TCTAGTGTCCCACATTTGAATGGCTTCATCTAGTGGGTTTTACCCTAATTTAGGGAGTTT CCCACGTTAATATTTGGTGTATATGTGTGTTTATATTGATGTTACATTTTTGTAGAAGAA TGTCTAGAAGCACTTAGTACTTGTCCTAGATATGTGTTGGAAGCACTCAGGGAGAAAAGA AAGTACTTCCGCTCGCTGCTTGCATGACCGCACAAGGCAGCTGAGGCAAGAACAGAATTC AGAAAGGTGCGCTCCTGCCCTGCGCACCGCGTCGGCCGTCACTCCGGCGTCGGCGGCCAC CAGTCTCGCCGCTCCCCACTCCAGGGACGGCGCCTACCTCCCGCTCCTAGGTGCCATGGC CTCTAGGGTCTTCCTGTCCAGGCCCCTCTCGCTGGAGCCCGACTCCCCCCCGCAGTCTTC GCCAAGATCCCGTTGCATGGTCGCGGCCTCAGCTCAGATCTCTCATCGTGCCGTAGATCC TGGGCACCGCCTTCGGTCCGCTGACCGCTCGTGCAGGGTGGCGGCACGGGGGCCTCTTGC GCCCCCACTCATCCTCCGGCGAATGGTGGGTGGCAGACCAAGATGGGTCGTCGCCCGCGG GCTCCGCCTGTCCGTGCCCCACCTGTGCGACGTCGGCGCCTGGCGGGGCGGCCCCGTGCA CTGCCGGCCCCTCGACCGCCGCCCTCCTCAAGGCCACCCCCGAAGCTTCATGGATGCTGC TACAACTGCAGGAGTGATGGGCATATCTATGTCGACTGCACGAATCCTACGTTCCGTGTC CCGGTGCCGTGGGGCCGGTCACACGTCGCGCGGGTTTACGTGTCCCCGCAGCCCCTCTCC GGTGGAGAAGCCGTCGCGTCCCCCGCCGGCCCTCCGCTCTAAGGTGACCACGTCCCCAAG CCCCGACCACGCAGTCTCCTTCCGATCTGCCACTCCGTCGCCTGGCTCGTTTCGAACATA TCTATACTTTTTAATTGTTCATGCTGATATGTTATTATTGTAAGATACTTTTTGTGCAGT CATATGCCAATTTATAATATTTTTGAGCACTAGCCTATTGACCCAGTGCCCAGTGCTAGT TCCTATTTTATGCGTGTTTTTTTGCTTTGCAGGTTTACCCTACCAAACGAATTTCAAATG CCACAAAACTTTAATATGATTTTTTCTGGACTATATGAAGACCTGCAAGCATCAGAAGTG GACGAGAGGCCGAACGAGGTAGGCACAAGCCAACAGGGCGCGGCCGCGCCCTAATGACTT GTGCCCCCCTAGATGCCTCCCGCCGTCCCTCTCTGACCTATAAATTCACAAATATTCCGA TGCACTCCCGAAACACTTTTTCCGCCGCCGCAAGTCTCTGTTCTGACGGAAGGCCATCTA AACCTCCATTCCGGCGATCTGTCGGAGGGGAGATCAGTCACGGAGGGCCTCTACATCAAC CTTGTTGCCCTCACCGTGATGTGTGAGTAGTTTACCACATACCTACGGGTCCGTAGGCAG TACCTAGATGACAATCTCTCTCTCTTATGATCTTCAATACCATGTTCATCGCATCTTCGC TTTGATCTATCCGATGTAATCACTATGTATGGTGTGTTTGTTGGGGTCCGATGAATTGTG GGTTTATGTTCAGATTATTCATGAAAAGTATTTGAGTCATCTCTGATTATTATGATTCTT AATTGCATGATCATCATAGCTTCATAATGCTCTTCGATCTATTGAGATAGTTTG
Protein Sequence (283 aa)
>BART1_0-u35721.001 283 150831_barley_pseudomolecules MCWKHSGRKESTSARCLHDRTRQLRQEQNSERCAPALRTASAVTPASAATSLAAPHSRDG AYLPLLGAMASRVFLSRPLSLEPDSPPQSSPRSRCMVAASAQISHRAVDPGHRLRSADRS CRVAARGPLAPPLILRRMVGGRPRWVVARGLRLSVPHLCDVGAWRGGPVHCRPLDRRPPQ GHPRSFMDAATTAGVMGISMSTARILRSVSRCRGAGHTSRGFTCPRSPSPVEKPSRPPPA LRSKVTTSPSPDHAVSFRSATPSPGSFRTYLYFLIVHADMLLL