- Transcript BART1_0-u30598.002
- Transcript IDBART1_0-u30598.002
- Gene IDBART1_0-u30598
Exon Structure of BART1_0-u30598.002
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 574820351 | 574819324 | + |
chr4H | 2 | 574820541 | 574820449 | + |
chr4H | 3 | 574820930 | 574820755 | + |
chr4H | 4 | 574821065 | 574821019 | + |
chr4H | 5 | 574822272 | 574822203 | + |
chr4H | 6 | 574822810 | 574822584 | + |
chr4H | 7 | 574822997 | 574822908 | + |
chr4H | 8 | 574823189 | 574823114 | + |
chr4H | 9 | 574823585 | 574823332 | + |
chr4H | 10 | 574827612 | 574827520 | + |
chr4H | 11 | 574829588 | 574828831 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0.0742943 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0.187168 | 0 |
morex | EPI | 0 | 0 | 0.0653027 |
morex | ROO | 0.163338 | 0 | 0 |
morex | ROO2 | 0 | 0 | 0.0830027 |
morex | NOD | 0.0727245 | 0 | 0.101408 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0 | 0.165409 | 0 |
morex | INF2 | 0.0709333 | 0.218499 | 0.292994 |
morex | CAR5 | 0.085987 | 0.0474338 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g10460.1 | +1 | 2e-179 | 526 | 289/363 (80%) | protein|expressed protein |
TAIR PP10 | AT2G18410 @ ARAPORT AT2G18410.1 @ TAIR |
+1 | 1e-72 | 244 | 147/365 (40%) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374 |
BRACH PP3 | Bradi1g71057.2.p | +1 | 0.0 | 594 | 312/363 (86%) | pacid=32795801 transcript=Bradi1g71057.2 locus=Bradi1g71057 ID=Bradi1g71057.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2912 bp)
>BART1_0-u30598.002 2912 150831_barley_pseudomolecules CCCAAACACATAGCTTTCATGTGCCCCAATAAAGGAATTTCAATAAGCATCTGACAGTTG CCAAAAAAAAAAAAAAGAGGAACAACAGACAATTATGTCTGAAAAAAGACAGTTAGGAGC AAGTAGTTGCCCCTACGAGGATTCCATAACAGCTCAACCAAATTAACAGATACTAGTTCT CATGTGCTAAATAAAAGGGATTTCAGTGAATAACAGGCAATATACTATCACAAGTAAGCT AGAAAAGAATTTGCAGAAACAACATATACTAATCTTTATAGCAAGTCCGAGCAATCATGT CGATTCAAATGAATTATGTGATTGCAGGGATGCAACTGCAAGTAGCAATACGAAACTCAG TGCCATGGGAACAACAAGCCGTCTAGCAAATTTCTTGGCAAGCGGGGGCATCAATTAGGG GGGCAAACGGACAGGAACCACAGAGACGAAGAGAGATACTGTACCTCTGAGCCAGCGGCT GCCTGGCGGGGGCGCGAACCAGCGGGAGCCTCTCCCCCGCCGCCCTCGCGCACGCCTGCA TCTTCCCCGCTCTCCTCTTCTTCCCTCCTCTCGCCGCCGTCGCCGCCGCCGTCGCCGCCG CGCAGGAAACGAGCAGAGGAACCGGAGAAGCCGGGCTTAGAACAGGGAGGAGGAGTCAAA CGTATCCGACATGGAAAGGGGGAGGCCGCACTCCGAGTCTGCCTGACAGGTGGGACCCAC GCCGCTCCTGAGTCCCGACTTCCGGGAGCTCTGCGAAAGAGGCCAGAGGGGCTCTTGTGC AAAAGCTCCACCCTCTCGCGCTAGGGTTTAAGGTTCTGAGTCGGGAGGCGCCGCCGGCGA CGACGACGGGGAGCTGAGATGGCGGACGCGGCCGTGAGGTGCCTCCGGGACGGCCGCCTC GACGGCGAGCACGCGCCAGCGCTGGCCGTGGAGGGCTCCCTCCAGTGCTGCCCCCTCGCG GCGCGCGCCATGCTCCACGTCGCCGCCGCCGTCGCCTCCAACGCGGCCGCGGGGAAGGCG CAGGCCAGGGGACTTGTGGTTGTGGCGTTTGACCGGAGCCCGGAAGTTTACCTGGATGCC ATGCTTCGGCACGGCCTTGATTCGAATGCACTGAGTCGATGTGTTCGGATATTGGATTGC TACTCAGACCCACTCGGGTGGAAGAAAAATATCCGAAGTCAGCAGCATCATGAGGACAGT GGAACACCGTGCTCATCAAACAAAGGCAACATCACAATTTTCAGAAGCGTGAAGGATGTT GATAAGTTATCGTGCTCCATAATTGATCTTGGAAGAGGGTTTGAAGGAGAAGGCAAGACC TATTTTTCTGTTGCTCTCGATTCAATTAGCTCTATGTTAAGGCATGCTTCAGTGCAATCA ATTTCAGGCCTTCTTAGTAATCTTCGGAGCCATGATCAGATATCATCAATCTTCTGGCTA ATGCATTCAGATCTCCATGAAACCAAGTTTTCCCGAGCTTTTGAATGCCTTTCTACCATG GTTGCTTGTGTAGAGCCAGAAGTTGTAGATTCTGTATATGGAGAAGAACGTAGGGGGGAC ATGTCTTTCCTTGAGCATAACTATTCGAAAGCAAAGTTCCATGTGCGCCTGAAACGAAGG AATGGACGGGTGAAGCATCTGCATGAGGAGTTATGTGTTGAGGGATATGATGTAAAATTT GTTTCTGCTACTTCTGTAAGTATGGAAGTGAACCAAAGTCTACTACCTAAGGTTCAGTTC AATCTTGAGCTGTCAGAAAAGGAACGGAGTGACAGGGCAAATGTTGTTCTTCCTTTCGAA CATCAAGGAAAGGGCGAGCCAATCCGTATATATGATGGACGGCGATCTCTCCCGGAGGCT CGTCAAGATCTCAATTTTACTACGGCAGCTCTCCTGGATGAAACAGAAGCTCTTAAATCT GCAGACACGAAGGGTGAAATTCATTACCTTCGTGATTCTGATGATGAGCGACCTGACTCG GATGAAGACCCCGATGATGATTTGGATATTTAGCCACAATGTGAGCTCTGTTTATCCTAG TGGTCAGCTATCAAGTCAAAGATCCTCTTCAACGACTCCAACCAACAACGTGGTCAAATA CGAGACTCTCATTCATGGTTTGCGTTTGGCCATCTCCATGGGCATTCACAAGAGGAACAT CAGGCGCTTGCGAAAATTCTAGGAGGCGTTCACTTTGCGTGGGCGGCTGGAGCTACTGCA TAGTTATGGTTGAACAATTTAAGCACCTGTATTATGTATAGCTTCGTGAGCATTGGAAGG CAACCTTTGCAAATCACTGGGTTTGAAATTTCTTGGATGCTCAAGACTAATGTGTTGATG GTAGCATATCGAATGAAAGGTCATATGCCCCAATGCGATTTTGTAGTTTTGTTTCGACGT GGATGAATGTTGGCTAGTGTGTCAGTCGCTGAAATGGGTCCAGAACAAGAGGATGCGACA TGTAACACTGTTTTTTCAGTTATATGAGAATATACACCGGGCTATTTGTTTGCTGGATGC TTACTTCTGTTCATTAATGTTTGATGGCTAGTAGTAACTGATTGTTCAGCCTTTGGTGAA TTTCCATTAACTAAACCAGCGTTAAACGCGTGACATGCTTCATTTTACTGTCGTATAGAG GATGGCAGAAATGACATGCAAACTTGTACTGTATATTAAGAAGAACAAATAGAACTTCTT CATTCATAATTTATAAATTGAACATATGATCCATCGCCTCTCCAGGACTGAGAACTCAAT CTCATGGGCGGGCGCCAATGAAATCCCAACAACAATGCTCTAAATCAACAACAATCAATG GCAGGCATATCTGAAATCACCGTATGGGCGCTAGCTAGACGCCTATGCATGCTAGTACCA GTATTAGACTAGACGTGTATGGTGTACTCGTC
Protein Sequence (384 aa)
>BART1_0-u30598.002 384 150831_barley_pseudomolecules MADAAVRCLRDGRLDGEHAPALAVEGSLQCCPLAARAMLHVAAAVASNAAAGKAQARGLV VVAFDRSPEVYLDAMLRHGLDSNALSRCVRILDCYSDPLGWKKNIRSQQHHEDSGTPCSS NKGNITIFRSVKDVDKLSCSIIDLGRGFEGEGKTYFSVALDSISSMLRHASVQSISGLLS NLRSHDQISSIFWLMHSDLHETKFSRAFECLSTMVACVEPEVVDSVYGEERRGDMSFLEH NYSKAKFHVRLKRRNGRVKHLHEELCVEGYDVKFVSATSVSMEVNQSLLPKVQFNLELSE KERSDRANVVLPFEHQGKGEPIRIYDGRRSLPEARQDLNFTTAALLDETEALKSADTKGE IHYLRDSDDERPDSDEDPDDDLDI