- Transcript BART1_0-u26461.017
- Transcript IDBART1_0-u26461.017
- Gene IDBART1_0-u26461
Exon Structure of BART1_0-u26461.017
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 13553293 | 13552805 | - |
chr4H | 2 | 13554330 | 13554251 | - |
chr4H | 3 | 13554582 | 13554412 | - |
chr4H | 4 | 13555708 | 13555595 | - |
chr4H | 5 | 13556062 | 13555928 | - |
chr4H | 6 | 13556270 | 13556187 | - |
chr4H | 7 | 13557718 | 13557579 | - |
chr4H | 8 | 13559790 | 13559662 | - |
chr4H | 9 | 13560019 | 13559901 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 1.92814 | 0 | 0 |
morex | ETI | 0.849231 | 0 | 2.35766 |
morex | LEA | 1.89882 | 0.178906 | 1.50208 |
morex | EPI | 1.81759 | 1.65271 | 3.21163 |
morex | ROO | 0.703074 | 0.993205 | 0.138469 |
morex | ROO2 | 1.31708 | 1.12914 | 1.12209 |
morex | NOD | 4.06142 | 1.60602 | 0.334506 |
morex | RAC | 6.74191 | 8.47594 | 7.36043 |
morex | INF1 | 2.96785 | 2.18332 | 1.51853 |
morex | INF2 | 0.0000701349 | 3.90553 | 4.25241 |
morex | CAR5 | 2.41239 | 2.11422 | 0 |
morex | CAR15 | 0.000100626 | 0 | 0 |
morex | LEM | 5.5888 | 4.40744 | 6.16397 |
morex | LOD | 0.391993 | 2.50045 | 3.24516 |
morex | PAL | 6.47188 | 7.29265 | 6.87834 |
morex | SEN | 0.0388951 | 0.407838 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g42350.1 | +2 | 8e-87 | 273 | 158/303 (52%) | protein|ankyrin, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g23634.1.p | +2 | 5e-93 | 288 | 161/301 (53%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1461 bp)
>BART1_0-u26461.017 1461 150831_barley_pseudomolecules GAAAATCCTGCGTCATATCGTATCTAACTCGATGGGTCTACTTTGTTTGTCTTGGGGAGC CATATCTAAATTCTATGCTCTCAGAGAAGACAGGGCAGTGTTAGGAAACTTCTGTGGTGG TAGAACACCTCTGTTTTTTGCAACATACTGCAATGGGGGTACTGCTGAGTATCTTCTTGA TCATGGAGCTAATCCAGACAAAGCCGATAACAATGGGGGTTTCCTGTTACATTATGCTGC TGAAATAGGTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCC GGTATGTGCTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTAT GAAGATTTTATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCT TATGGCTGCTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGCTGTGGCA TCCTGCAATTTGTGACCCCTTGTACCGGACACTTCCACAACCATTTAAAAAAAAACTTGT CGCATATTGAGGCTGGGGAGGACTTCTGCATATGTGCCATGTTGATATTAATAGTTACCT CAACATGGTTCAGAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATC ACTAGGGAGTATCTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCA GGCAATGCAGCTTGATCCTGGTGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCT TCACATGGGATATGGAAGAAAGGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCC TCTCTGGCCAAAAGCTTGTCGCCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGA GGGTGCAAGTGAACGGTTCTTGGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGA GGATGCATTACGGGAAGCTATGAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTG ACTATTTGCGTGTCGCAGGGAAATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCA TTTTGCGCAAAGACCGATTTCCTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAG AGTGTATTACCGTCGGCATGTTTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCC CGCGGAAACTCGTCAGTTGCCATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTAT TTGGGTCTTCTGAAGCTCACTCGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCA GCCTCTGCATTTGTCTTGTTGCGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTA ACTACTCAACGATGGTACAATGTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGT CCTGTGGGTGCATAATTAGAG
Protein Sequence (182 aa)
>BART1_0-u26461.017 182 150831_barley_pseudomolecules KILRHIVSNSMGLLCLSWGAISKFYALREDRAVLGNFCGGRTPLFFATYCNGGTAEYLLD HGANPDKADNNGGFLLHYAAEIGSCEMVELLLAKGAYVDPVCARGTPLHIAAGGGQYGAM KILLDHSADYNKMVDGVTPLMAAKDANSTECIKLLVKLWHPAICDPLYRTLPQPFKKKLV AY