- Transcript BART1_0-u26461.011
- Transcript IDBART1_0-u26461.011
- Gene IDBART1_0-u26461
Exon Structure of BART1_0-u26461.011
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 13553293 | 13552716 | - |
chr4H | 2 | 13554330 | 13554251 | - |
chr4H | 3 | 13554573 | 13554412 | - |
chr4H | 4 | 13555708 | 13555595 | - |
chr4H | 5 | 13556270 | 13556187 | - |
chr4H | 6 | 13557718 | 13557579 | - |
chr4H | 7 | 13559790 | 13559662 | - |
chr4H | 8 | 13560835 | 13560650 | - |
chr4H | 9 | 13561000 | 13560935 | - |
chr4H | 10 | 13561190 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 2.11829 | 0.558864 | 2.86743 |
morex | ETI | 0 | 2.08892 | 3.34327 |
morex | LEA | 1.78835 | 0.845495 | 0.100721 |
morex | EPI | 0.356825 | 1.18979 | 0 |
morex | ROO | 0 | 1.82935 | 0.800916 |
morex | ROO2 | 1.72766 | 1.10179 | 1.75586 |
morex | NOD | 1.85439 | 1.17178 | 0.000000036685 |
morex | RAC | 3.9833 | 5.47344 | 6.24952 |
morex | INF1 | 11.2446 | 11.7781 | 13.0848 |
morex | INF2 | 19.2176 | 21.2743 | 14.3711 |
morex | CAR5 | 3.81646 | 5.07602 | 1.48975 |
morex | CAR15 | 0.442777 | 0 | 0.00689353 |
morex | LEM | 2.63693 | 1.10273 | 2.45146 |
morex | LOD | 3.66769 | 4.50564 | 2.51706 |
morex | PAL | 3.78874 | 2.37818 | 3.50521 |
morex | SEN | 0.133297 | 0 | 0.348846 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g42350.1 | +2 | 4e-99 | 306 | 196/396 (49%) | protein|ankyrin, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g23634.1.p | +2 | 1e-114 | 346 | 211/393 (54%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1649 bp)
>BART1_0-u26461.011 1649 150831_barley_pseudomolecules CCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAGCAC ATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGTCCACGACCC GATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAAAGTCGCT GGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACTTGAGGGT GGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGGGGAGCCT GGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCGACAAGGA AGGTAGAACACCTCTGTTTTTTGCAACATACTGCAATGGGGGTACTGCTGAGTATCTTCT TGATCATGGAGCTAATCCAGACAAAGCCGATAACAATGGGGGTTTCCTGTTACATTATGC TGCTGAAATAGGTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGA CCCGGTATGTGCTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGC TATGAAGATTTTATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACC TCTTATGGCTGCTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGGTTCA GAAGGAGCCTATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTAT CTCTTTAAAGAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGCTTGATCCTGG TGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAA GGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCG CCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTT GGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTAT GAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGA AATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTC CTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGT TTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCC ATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACT CGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTG CGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAAT GTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAG GAGCGTGATGTAGGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGC TGGTTGCTGTGTGGGCTCAATGGCATNNN
Protein Sequence (346 aa)
>BART1_0-u26461.011 346 150831_barley_pseudomolecules MVSPYRAHSEVHDPMLDMVFQAASDNDLPRLKSLVVMLDLGRGRPKKVIEDLRVEDDPKL EGFSALHIAARGSLEVCRYLVEELLVDVDLVDKEGRTPLFFATYCNGGTAEYLLDHGANP DKADNNGGFLLHYAAEIGSCEMVELLLAKGAYVDPVCARGTPLHIAAGGGQYGAMKILLD HSADYNKMVDGVTPLMAAKDANSTECIKLLVKVQKEPMLKREITASELISLGSISLKKKD YVVAAKLYSQLDPGDAVLLSDRSLCWLHMGYGRKALLDANQCRKMRPLWPKACRRQGEAL MLLKDYEGASERFLDGLKLDPVDTAIEDALREAMKSLMTSRSTKAN