- Transcript BART1_0-u26461.010
- Transcript IDBART1_0-u26461.010
- Gene IDBART1_0-u26461
Exon Structure of BART1_0-u26461.010
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr4H | 1 | 13553293 | 13552715 | - |
chr4H | 2 | 13554330 | 13554251 | - |
chr4H | 3 | 13554582 | 13554412 | - |
chr4H | 4 | 13555708 | 13555595 | - |
chr4H | 5 | 13556270 | 13556187 | - |
chr4H | 6 | 13557718 | 13557579 | - |
chr4H | 7 | 13559790 | 13559662 | - |
chr4H | 8 | 13560835 | 13560539 | - |
chr4H | 9 | 13561000 | 13560935 | - |
chr4H | 10 | 13561190 | 13561081 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0.255778 | 0 |
morex | EPI | 0 | 0.069425 | 0 |
morex | ROO | 0.0000442024 | 0 | 0 |
morex | ROO2 | 0.286684 | 0.225509 | 0 |
morex | NOD | 0 | 0 | 0 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0 | 0 |
morex | CAR5 | 0 | 0.401208 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g42350.1 | +2 | 3e-96 | 300 | 192/433 (44%) | protein|ankyrin, putative, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi2g23634.1.p | +2 | 5e-110 | 335 | 212/430 (49%) | pacid=32774779 transcript=Bradi2g23634.1 locus=Bradi2g23634 ID=Bradi2g23634.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1770 bp)
>BART1_0-u26461.010 1770 150831_barley_pseudomolecules CCTCGCTGCTCTTTTCTCCATTCAAAGCTCCAAGCCCCTTCTCCACCCCCACCCTAGCAC ATCCTCCTCGACCGACGCCATGGTGTCGCCCTACCGAGCTCATTCCGAAGTCCACGACCC GATGCTGGACATGGTCTTCCAGGCGGCATCCGACAACGACCTCCCCCGCTTAAAGTCGCT GGTCGTGATGCTGGACTTGGGCAGGGGCCGCCCCAAGAAGGTGATTGAGGACTTGAGGGT GGAAGACGATCCCAAGCTTGAAGGTTTCAGCGCGCTGCACATCGCGGCCAGGGGGAGCCT GGAGGTGTGCAGGTACCTCGTCGAGGAGCTGCTGGTGGATGTGGATCTGGTCGACAAGGA AGGTCCAACTATCTTCAAAACCCTAATCTTTCGGTGCAGGCTTCGTCGAATTGCATGGAG TGCCTATTTTACATGCTGGAATTTGTTGTTCGCTAGGGCTGCTTCATCTGTAGGTAGAAC ACCTCTGTTTTTTGCAACATACTGCAATGGGGGTACTGCTGAGTATCTTCTTGATCATGG AGCTAATCCAGACAAAGCCGATAACAATGGGGGTTTCCTGTTACATTATGCTGCTGAAAT AGGTAGTTGTGAAATGGTAGAGCTTTTGCTTGCAAAAGGAGCTTACGTTGACCCGGTATG TGCTCGTGGAACACCACTTCATATTGCTGCTGGTGGAGGGCAGTATGGTGCTATGAAGAT TTTATTGGACCACAGTGCAGATTACAACAAGATGGTAGATGGTGTGACACCTCTTATGGC TGCTAAAGATGCCAACTCAACGGAATGTATCAAGCTCCTAGTTAAGGTTCAGAAGGAGCC TATGCTTAAACGAGAAATCACGGCATCAGAGCTTATATCACTAGGGAGTATCTCTTTAAA GAAAAAAGATTATGTTGTCGCAGCAAAATTGTACAGTCAGGCAATGCAGCTTGATCCTGG TGATGCAGTCTTGCTCTCAGACAGGAGCCTTTGTTGGCTTCACATGGGATATGGAAGAAA GGCTTTGCTAGATGCTAATCAATGCAGAAAAATGCGGCCTCTCTGGCCAAAAGCTTGTCG CCGGCAGGGTGAAGCTCTGATGCTACTGAAGGACTATGAGGGTGCAAGTGAACGGTTCTT GGATGGACTCAAATTGGACCCAGTGGACACTGCTATCGAGGATGCATTACGGGAAGCTAT GAAGTCCTTGATGACGTCTCGGAGCACGAAAGCCAATTGACTATTTGCGTGTCGCAGGGA AATCAGCTGAAGACTTGAAACGGGTCAGGAGTTTCTCCATTTTGCGCAAAGACCGATTTC CTTTAGAAAGTAAAGCGACGTGTCTCATGGCCTGATGAGAGTGTATTACCGTCGGCATGT TTTGTATGAGCATGACTGTTGATGCTTGCAGTAGTACCCCGCGGAAACTCGTCAGTTGCC ATCTATCTGTCGTGTATTACAGGCTCTTATGTCAGGTATTTGGGTCTTCTGAAGCTCACT CGTCTGCCGCTCCTGGTGCAGCGTCCCCGAATGATCGCAGCCTCTGCATTTGTCTTGTTG CGGTTTTGCTGAATTGCCTCCTGGCTCTGTAGTGTTTTAACTACTCAACGATGGTACAAT GTAGTGAAGATGGAGATATCTTGTGTAGGTTTTCTTCGTCCTGTGGGTGCATAATTAGAG GAGCGTGATGTAGGCTAAGTTTTGGTAGCTGCTATCCCGTCTTGTTTTCCTGACTTCAGC TGGTTGCTGTGTGGGCTCAATGGCATNNNN
Protein Sequence (386 aa)
>BART1_0-u26461.010 386 150831_barley_pseudomolecules MVSPYRAHSEVHDPMLDMVFQAASDNDLPRLKSLVVMLDLGRGRPKKVIEDLRVEDDPKL EGFSALHIAARGSLEVCRYLVEELLVDVDLVDKEGPTIFKTLIFRCRLRRIAWSAYFTCW NLLFARAASSVGRTPLFFATYCNGGTAEYLLDHGANPDKADNNGGFLLHYAAEIGSCEMV ELLLAKGAYVDPVCARGTPLHIAAGGGQYGAMKILLDHSADYNKMVDGVTPLMAAKDANS TECIKLLVKVQKEPMLKREITASELISLGSISLKKKDYVVAAKLYSQAMQLDPGDAVLLS DRSLCWLHMGYGRKALLDANQCRKMRPLWPKACRRQGEALMLLKDYEGASERFLDGLKLD PVDTAIEDALREAMKSLMTSRSTKAN