- Transcript BART1_0-u25435.025
- Transcript IDBART1_0-u25435.025
- Gene IDBART1_0-u25435
Exon Structure of BART1_0-u25435.025
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 681733477 | 681733156 | - |
chr3H | 2 | 681734115 | 681733967 | - |
chr3H | 3 | 681734573 | 681734396 | - |
chr3H | 4 | 681734745 | 681734683 | - |
chr3H | 5 | 681735055 | 681734894 | - |
chr3H | 6 | 681735390 | 681735231 | - |
chr3H | 7 | 681735974 | 681735866 | - |
chr3H | 8 | 681736144 | 681736050 | - |
chr3H | 9 | 681736609 | 681736477 | - |
chr3H | 10 | 681737010 | 681736938 | - |
chr3H | 11 | 681737704 | 681737606 | - |
chr3H | 12 | 681737948 | 681737800 | - |
chr3H | 13 | 681738516 | 681738306 | - |
chr3H | 14 | 681738721 | 681738587 | - |
chr3H | 15 | 681738879 | 681738807 | - |
chr3H | 16 | 681739133 | 681738961 | - |
chr3H | 17 | 681739955 | 681739754 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 5.85622 | 4.50214 |
morex | ETI | 0.0000403249 | 4.88034 | 13.6277 |
morex | LEA | 0.297524 | 5.30831 | 3.64438 |
morex | EPI | 0.402608 | 0.0000548268 | 1.7144 |
morex | ROO | 3.85454 | 4.19868 | 0.5212 |
morex | ROO2 | 7.71046 | 4.48429 | 4.77144 |
morex | NOD | 0.87462 | 3.7167 | 6.83141 |
morex | RAC | 5.56385 | 3.07045 | 2.31448 |
morex | INF1 | 15.7836 | 23.5888 | 17.7117 |
morex | INF2 | 7.67344 | 21.4094 | 19.2449 |
morex | CAR5 | 1.97332 | 6.07571 | 8.65573 |
morex | CAR15 | 1.4757 | 0 | 0 |
morex | LEM | 12.115 | 8.11787 | 4.35181 |
morex | LOD | 8.25954 | 12.8818 | 9.11906 |
morex | PAL | 3.67414 | 0.956065 | 2.85107 |
morex | SEN | 1.99281 | 2.58979 | 3.56669 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g72880.1 | +2 | 0.0 | 1171 | 617/736 (84%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+2 | 0.0 | 897 | 481/737 (65%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
BRACH PP3 | Bradi2g61370.1.p | +2 | 0.0 | 1258 | 656/736 (89%) | pacid=32771966 transcript=Bradi2g61370.1 locus=Bradi2g61370 ID=Bradi2g61370.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2486 bp)
>BART1_0-u25435.025 2486 150831_barley_pseudomolecules CGGGGAGCCGCCCCGCATCCGGCGGCTGGAGGAGTCGGTGGTGAACCGCATCGCCGCGGG GGAGGTGATCCAGCGGCCCTCGTCGGCGGTGAAGGAACTCGTCGAGAACAGCATCGACGC CGGCTCCTCCACCATCTCCGTCACCGTCAAGGACGGGGGCCTCAAGCTCATCCAGGTCTC GGACGACGGCCACGGCATCCGGTGTGAGGACTTGCCAATATTGTGTGAGAGGCATACTAC CTCAAAGTTGTCTGCATATGAGGATCTACAGACAATAAAGTCCATGGGGTTCAGAGGGGA GGCTTTGGCCAGTATGACTTATGTTGGCCATGTTACCGTGACAACAATAACAGAAGGCCA ACTGCATGGCTACAGAGTTTCTTATAGGGATGGAGTAATGGAGAATGACCCAAAGCCCTG TGCTGCGGTTAAAGGAACTCAAATCATGGTTGAAAATTTATTCTACAATATGGTAGCTCG TAGGAAAACACTGCAGAACTCCAATGATGACTATCCAAAGATAGTGGACTTCATCAGTCG GTTTGCAGTCCATCACATCAATGTGAACTTCTCTTGCAGAAAGCATGGAGCCAATAGAGC AGATGTTCACAGTGGGAGCACATCTTCAAGGCTAGATGCTATCAGGAATGTCTATGGGGC TTCGGTTGTTCGTGATCTGATGGAAATACAGGTTTCAGATGAGAATGCTGTAGATGAAAT ATTCAAGATGGATGGTTTCATCTCAAATGCAAATTATGTGGCAAAGAAGACTACTATGAT TCTTTTCATAAATGATCGACTTGTAGATTGCACTTCTTTGAAAAGAGCTACTGAATTTGT GTACTCTGCAATACTGCCTCAAGCATCGAAACCCTTCATATACATGTCCATCAATCTTCC ACCAGAACACGTGGATGTCAATATACATCCAACCAAAAAGGAGGTTAGCCTCTTAAATCA AGAGCGTATTATTGAAAAAATTAAAGATGCCATCGAGGAAAAACTGGTGAACTGTAATAA CACAAGGATATTCCAAACTCAGGCACTAAACCCTTCAGCACTTACTCAAGCTAACACACG AAAGGACATGGGTACCGAGGTCAGCACGCCTACTGGAGAAAAATCTCAAAAGATTCCTGT GAGCCAAATTGTCAGAACAGATCCTCGCGATCCATCTGGAAGGTTGCACACCTATTGGCA AGGTCAAACTTCAAATCTTGAAAAGAAGTCTGACCTTGTTGCCGTAAGAAATATTGTAAG ATCAAGAAGGAATCCAAAAGATGCTGGTGATTTGTCCAGTCGCCATGAGCTTGTTACAGA AATAGATTCTAACTTACATCCTGGCCTTTTCGATATTGTTAAGAATTGCACATATGTTGG AGTTGCGGATGAAGTTTTCGCTTTGATACAACACAATACCCTCTTATACCTTGTCAATGT GGTAAATGTTAGCAAAGAACTCATGTACCAACAAGCCTTGTGCCGTTTTGGGAACTTCAA TGCTATAAAACTCAGTGAACCAGCTCCACTTCTGGAGTTGCTGAGAATGGCACTGAAAGA TGACGAGTCAATGAGTGATGTAAATGAGAAGGAGAAACTAGAAATTGCAGAAGTGAACAC TGAGATACTGAAAGAAAATGCTGAGATGATTAATGAGTACTTCTCTATTCACATTGATCA AGGTGGCAACCTGACCAGACTTCCTGTTGTACTTGATCAGTACACTCCTGATATGGATCG CCTTCCAGAGTTCATGTTGAGTCTAGGAAATGATATATGGCAGCCAGCTGTCCAGAAGTA ACTTATGTTTCTTATTTTGTACTGTATAAGTCACTTGATTACCTGGGACGTTGAGAAAGA GTGCTTCAGAACGGCAGCAGCTGCTATCGGAAACTTCTATGCGCTTCATCCTCCCATCCT TCCAAATCCATCTGGCAAAGGCATTCAGTTATACAAGAAAAATAAAGATTGCATGGGAAG TGCTGAACAGGCTGATAACAATTTACCAAGTACAGATGAAGATGACATCGATCAAGAGCT GCTTGCGGAAGCAGAGGCAGCATGGGCTCAACGTGAGTGGACCATCCAGCACGTCTTGTT CCCGTCGATGCGACTTTTCCTCAAGCCCCCTAAGTCGATGGCAACTGATGGAACGTTTGT CCAGATTGCTTCTCTAGACAAGCTTTACAAGATCTTCGAGAGATGCTAGCCGACAAGCGG CATGTCGAGAAGGAAGGGAAGAGCGCGACGCGACCGACGCCCTTGCCGGTTCCTTCCGGG ACGTGTGTATATAATGCGGTGTCACTGTTTTTTCCCCCCTTTTTCCGATAGGGCTGTAAA TATTTTTGAAGGACGAGCAAAGTTTGCTGGGCTCCAGCTCAGCCCTGGAATTGAATGGCA AATGCACGAATGATTTGGCTCTGCTACGCAATGCTGTCATTGTTGTTTCCCTCTAATGAC CCCGCTGGCAGATATGTCATGCCCTC
Protein Sequence (599 aa)
>BART1_0-u25435.025 599 150831_barley_pseudomolecules GEPPRIRRLEESVVNRIAAGEVIQRPSSAVKELVENSIDAGSSTISVTVKDGGLKLIQVS DDGHGIRCEDLPILCERHTTSKLSAYEDLQTIKSMGFRGEALASMTYVGHVTVTTITEGQ LHGYRVSYRDGVMENDPKPCAAVKGTQIMVENLFYNMVARRKTLQNSNDDYPKIVDFISR FAVHHINVNFSCRKHGANRADVHSGSTSSRLDAIRNVYGASVVRDLMEIQVSDENAVDEI FKMDGFISNANYVAKKTTMILFINDRLVDCTSLKRATEFVYSAILPQASKPFIYMSINLP PEHVDVNIHPTKKEVSLLNQERIIEKIKDAIEEKLVNCNNTRIFQTQALNPSALTQANTR KDMGTEVSTPTGEKSQKIPVSQIVRTDPRDPSGRLHTYWQGQTSNLEKKSDLVAVRNIVR SRRNPKDAGDLSSRHELVTEIDSNLHPGLFDIVKNCTYVGVADEVFALIQHNTLLYLVNV VNVSKELMYQQALCRFGNFNAIKLSEPAPLLELLRMALKDDESMSDVNEKEKLEIAEVNT EILKENAEMINEYFSIHIDQGGNLTRLPVVLDQYTPDMDRLPEFMLSLGNDIWQPAVQK