- Transcript BART1_0-u20322.137
- Transcript IDBART1_0-u20322.137
- Gene IDBART1_0-u20322
Exon Structure of BART1_0-u20322.137
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 230454148 | 230453834 | + |
chr3H | 2 | 230454412 | 230454273 | + |
chr3H | 3 | 230454815 | 230454481 | + |
chr3H | 4 | 230456500 | 230455544 | + |
chr3H | 5 | 230456754 | 230456620 | + |
chr3H | 6 | 230458200 | 230457669 | + |
chr3H | 7 | 230459496 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0.413565 | 0.0000115513 | 0 |
morex | LEA | 0.151664 | 0.0602583 | 0 |
morex | EPI | 0.0804708 | 0 | 0 |
morex | ROO | 0 | 0.152772 | 0.148942 |
morex | ROO2 | 0.251309 | 0 | 0 |
morex | NOD | 0.0841968 | 0 | 0 |
morex | RAC | 0.271076 | 0.318974 | 0.520119 |
morex | INF1 | 0 | 0 | 0.0154309 |
morex | INF2 | 0 | 0.0931256 | 0.437639 |
morex | CAR5 | 0 | 0.357217 | 0.0000971089 |
morex | CAR15 | 0.00363836 | 0.136885 | 0 |
morex | LEM | 0.32503 | 0.0966413 | 0.633887 |
morex | LOD | 0.000000152104 | 0.395886 | 0.0000074067 |
morex | PAL | 0 | 0.255147 | 0.203914 |
morex | SEN | 0.268694 | 0 | 0.16298 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g19480.1 | +3 | 2e-54 | 144 | 83/152 (55%) | protein|SET domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g64460.4.p | +3 | 2e-62 | 165 | 92/156 (59%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3123 bp)
>BART1_0-u20322.137 3123 150831_barley_pseudomolecules CGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCGCGGCCAC CCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCCCCGCTCC CTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGTCAAAGAA CGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGGT CGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCAC CGGGATGGCCCCATGATCAGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACG GGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATAA AGCATCGGCATCATCTACGGAATTCCTTGTGAATTGAGAAGCTGGAGGCAAACAGGAGGG CGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCGTTGA GGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGATCG TTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGAGA ACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCATCG TTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGATCT TCCTGGACAATGCAGAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAG AATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAAT TGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTA ATAATAGAATATATATTGGCCAATTGAGATGCTTTTTAATGCATATTGATGTTGAACTTG AAAATGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATA CTATGTTTCATCGCCAATTTTGCATGTTCGATGTGGCACACGTGCGGCATGTTCGATGTG GCCGCCAAGGCGGAGGTGGCGTTGGTATGCATATCAAACAAGATCTATATGCATTATCTT GAACCTGCAAATGATTCTAGACCAGCAATACAAGTATATGTTCACATATTGATGAAACTG AAAATGCTTCTGCTATTTCAGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAG TTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGG ATGGAGCTGACACGCTGTGACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGAT TTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATC GTTGCCGGATCAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGA AAGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTG CAAGCCGTGAGATTTCGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCG GAGACGGCTATGAAGGCATCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGA TCAGCATATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGC CCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGG CGAACATCTTTCTATTTTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGA ATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACAG CCGGAGCGTGGGTATGCTTCAGATTTGTACTATTCTTTATTAATACCTTCTCTTTCTTTA CGAAAATTCACAAATTAGTGATGTGTATTGTGCTTATTTTATTACTTTATTTTTATCCTG TAGGTAAATGCTTCTTTGCGAAGTACAGTTATACAATATGAATCTTTTAGTCACAATCAG TATTATGCCTTGTACACATTTTTGTTGCGTTGTTGTAGGCTTGTAGCTGAATTTTCTGAT GATAGACTGAACTCTATATGCAGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAA AGAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAG GGCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATG TGAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACA AGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGA CGTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATG GTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATA GCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTT TCCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCA GGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGT TGTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCT GCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGT CTAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTG TATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCA GCCGGCGGATCTGTCTGTGTGCACATCAATCGCCTTTCTGACCATCGGATCTTTTATAAT CAG
Protein Sequence (127 aa)
>BART1_0-u20322.137 127 150831_barley_pseudomolecules MPDLGGADTSPIAVAPLPPDCGRTASSPTAAASPCQRTVTPHPVPDHGRLASRRSRWSAY GGSNHRHGVVLLQSLLPPGWPHDQWLDVGTSALMALHGKLTQMKRQIQQARLTSMRIKHR HHLRNSL