- Transcript BART1_0-u20322.136
- Transcript IDBART1_0-u20322.136
- Gene IDBART1_0-u20322
Exon Structure of BART1_0-u20322.136
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 230454148 | 230453833 | + |
chr3H | 2 | 230454815 | 230454278 | + |
chr3H | 3 | 230455710 | 230455549 | + |
chr3H | 4 | 230456521 | 230456035 | + |
chr3H | 5 | 230456754 | 230456614 | + |
chr3H | 6 | 230457777 | 230457660 | + |
chr3H | 7 | 230458200 | 230458030 | + |
chr3H | 8 | 230459448 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 1.68126 | 0.238874 | 0 |
morex | LEA | 0.817026 | 0.0114631 | 0.00000000156054 |
morex | EPI | 0 | 0.153875 | 0.00000527783 |
morex | ROO | 0 | 0 | 0 |
morex | ROO2 | 0 | 0.328648 | 0 |
morex | NOD | 0.226445 | 0.00000913224 | 0 |
morex | RAC | 1.31711 | 0.971352 | 0.384875 |
morex | INF1 | 0.0014171 | 0 | 0.00000650304 |
morex | INF2 | 0 | 0.318438 | 0.000749439 |
morex | CAR5 | 1.09676 | 0.11085 | 0.0223585 |
morex | CAR15 | 0 | 0.0000000128204 | 0 |
morex | LEM | 0.000232306 | 1.39857 | 0.538364 |
morex | LOD | 0.00000000026422 | 0.0055262 | 0 |
morex | PAL | 0.76576 | 1.46251 | 0.544766 |
morex | SEN | 0.0000000873769 | 0 | 0.00000018356 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g19480.1 | +1 | 3e-59 | 214 | 109/169 (64%) | protein|SET domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g64460.4.p | +1 | 1e-66 | 238 | 121/168 (72%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2594 bp)
>BART1_0-u20322.136 2594 150831_barley_pseudomolecules TCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACCGCGGCCA CCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGCCCCGCTC CCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTGTCAAAGA ACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAGTAGGTGG TCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCTCCTCCCA CCGGGATGGCCCCATGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCCACGGGAA GCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGATAAAGCA TCGGCATCATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATGTGATCCT CCTGTTTTGAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGCAAACAGG AGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGAGGCGGCG TTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGG ATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAG GAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACC ATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGG ATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGA ATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATT GCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTTC AACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCC GAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGTGACGCCA CAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAG GCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGCACTCGAGGA GGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTT CTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTCGGAACCACT AGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATCAACAT GAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTC CATGTTCAGATTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGT GCCCATGCGGCAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTA GGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTG GCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTT GGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAA GAGCAACTCGCACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGG GCATCCATTGGCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGT GAACGAACACCGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAA GGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGAC GTCCGGCTTCTTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGG TGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAG CCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTT CCACTCAATCTGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAG GTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTT GTCTTCATCCGTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTG CACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTC TAGAAATATTTGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGT ATGTGATTGTGAACTACTTCCATATTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAG CCGGCGGATCTGTC
Protein Sequence ( aa)
>BART1_0-u20322.136 150831_barley_pseudomolecules