- Transcript BART1_0-u20322.131
- Transcript IDBART1_0-u20322.131
- Gene IDBART1_0-u20322
Exon Structure of BART1_0-u20322.131
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 230454148 | 230453826 | + |
chr3H | 2 | 230454815 | 230454278 | + |
chr3H | 3 | 230455710 | 230455549 | + |
chr3H | 4 | 230456504 | 230456035 | + |
chr3H | 5 | 230456754 | 230456614 | + |
chr3H | 6 | 230457777 | 230457660 | + |
chr3H | 7 | 230458200 | 230458030 | + |
chr3H | 8 | 230459507 | 230458788 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0.00000966598 | 0.00000965027 | 0 |
morex | LEA | 0.000648836 | 1.01662 | 0 |
morex | EPI | 0 | 0.00611917 | 2.24896 |
morex | ROO | 0 | 0 | 0.00000703214 |
morex | ROO2 | 0 | 0.0150952 | 0.115005 |
morex | NOD | 0.00000109877 | 0.00000026444 | 0 |
morex | RAC | 0.000000472309 | 0.0000558157 | 0.00000460559 |
morex | INF1 | 0.0000000693851 | 0 | 0.0000000134132 |
morex | INF2 | 0 | 0.00000669125 | 0 |
morex | CAR5 | 0.0000000771051 | 0.00257239 | 0.00000000433996 |
morex | CAR15 | 0 | 0.000000000407029 | 0 |
morex | LEM | 0.00000000414393 | 0.00000174449 | 0.0000154271 |
morex | LOD | 0 | 0.00000239984 | 0 |
morex | PAL | 0.00000151997 | 0.00168361 | 0.0000000122806 |
morex | SEN | 0.000000268123 | 0.425451 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os03g19480.1 | +2 | 3e-59 | 214 | 109/169 (64%) | protein|SET domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g64460.4.p | +2 | 1e-66 | 238 | 121/168 (72%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2643 bp)
>BART1_0-u20322.131 2643 150831_barley_pseudomolecules CCGCACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGGATCCCCAGTCCCCGACC GCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCCCCGATCGCGGTCGC CCCGCTCCCTCCAGATTGCGGCAGGACCGCCTCGTCCCCGACCGCGGCCGCGTCACCCTG TCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTCGCGTCGAGGAGAAG TAGGTGGTCGGCCTACGGCGGCTCGAACCATCGCCATGGCGTCGTCCTCCTCCAAAGCCT CCTCCCACCGGGATGGCCCCATGTGGCTCGACGTGGGCACCTCCGCGCTCATGGCGCTCC ACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCAGGCCCGCCTCACCTCCATGAGGA TAAAGCATCGGCATCATCTACGGAATTCCTTGTGAATTGTGAGTTTCGGGTCACTCAATG TGATCCTCCTGTTTTGAGCTTGTGTGCCTATGTTGTGTTTTGACAGGAGAAGCTGGAGGC AAACAGGAGGGCGTTGCAGAAGCACACCGGCGGCCTGTTCGATGTGGCTGCCAAGGCGGA GGCGGCGTTGAGGGGCTCGGAGAGCAGCAATGTGCTGTCGCAGCTCGCCTCGGACGGCCA GTCCAGGATCGTTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGT GCAGGAGGAGAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGC ACAAACCATCGTTTTGTAGATTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACAC CACGTGGATCTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAG GAGGAGAATTTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGA ACAAATTGCACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAAT ATGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCT CGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGATGGAGCTGACACGCTGT GACGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGT CACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATCAATGCAC TCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTG CGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTCGG AACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCA TCAACATGAACCGGAGGGCCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTTCAGA TTTTCACATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGG CAGAGCAAGGGATACTTATGGAACATATACGTTGTGCCAATGCATCGTTAGGCGAACATC TTTCTATTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAG AATGTGAGAGGCCCTCGGGAGTGAAAAAACTATCATTTGAGATAGTTGTTGGATTGAACA GCCGGAGCGTGGTGGCAAGGCAGCTAGAGACAAAAAGGGAATTGGTGAAAGAGCAACTCG CACATCTATAGGTCTCTTGGAATCTCACATTTATCAATTTATGGAAAAGGGCATCCATTG GCATTCTAATAATTTTGTTAGAGAACGGCATGGACTGAGGCAGCCGATGTGAACGAACAC CGGGTACCCATAAACAAGAGGAAAAAACAACACATGTACAACGACAACAAGGTTAGCTAA GAAAAAATCAGGCTGCCGGTGTCTATTAACCTAGGGCATGATCTTGGGACGTCCGGCTTC TTTCCAAAGTGAGATCTCATCCAACATCAGGTTGAAGACACTCAAAATGGTGGAACTTAA GTTGCGGACAATTCTGGTGTTTCGCTCCTTCCACGTGAACCACCAGATAGCCTGCACTAA GTAGTTCCATCCCTTCTTCTTCGGGGCAGCAAGACTGGCAGCGGAACTTTCCACTCAATC TGAGAGGCGGCTGGTGTCGCTGGAGGGGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCAT GAGCCGCCAAATAGCCTGAAAAATAGGCATTGAGTGAGCAAAAGAATGTTGTCTTCATCC GTTGAGCGACTCATGTAGTACACCGGATCAGGGGAGCAGCCCCTTTTCTGCACATTGTCC CCGGTATATGTTGGCTTGGCCTTCTACTGCCCTTTAGTTATGTTACTGTCTAGAAATATT TGTAGTAGTTTTAAGATTTGAAAGCTCATTTTTATTAACTTGCTGTGTGTATGTGATTGT GAACTACTTCCATATTTTAGAAATATTATAAGGGAAAAGTTTTTGGTCAGCCGGCGGATC TGTCTGTGTGCACATCAATCGCCTTTCTGACCATCGGATCTTTTATAATCAGACCACTTT AAA
Protein Sequence ( aa)
>BART1_0-u20322.131 150831_barley_pseudomolecules