- Transcript BART1_0-u18690.015
- Transcript IDBART1_0-u18690.015
- Gene IDBART1_0-u18690
Exon Structure of BART1_0-u18690.015
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr3H | 1 | 67425398 | 67425185 | - |
chr3H | 2 | 67425680 | 67425530 | - |
chr3H | 3 | 67425984 | 67425751 | - |
chr3H | 4 | 67426259 | 67426201 | - |
chr3H | 5 | 67426950 | 67426694 | - |
chr3H | 6 | 67427189 | 67427047 | - |
chr3H | 7 | 67427332 | 67427278 | - |
chr3H | 8 | 67427506 | 67427429 | - |
chr3H | 9 | 67427717 | 67427601 | - |
chr3H | 10 | 67428486 | 67427863 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.0998554 | 0 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0 | 0 | 0 |
morex | ROO | 0 | 0 | 0 |
morex | ROO2 | 0.150643 | 0 | 0 |
morex | NOD | 0 | 0 | 0 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0 | 0 |
morex | CAR5 | 0 | 0 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0.147034 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0 | 0 | 0.116702 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g08700.6 | +1 | 0.0 | 424 | 199/233 (85%) | protein|GIGANTEA, putative, expressed |
TAIR PP10 | AT1G22770 @ ARAPORT AT1G22770.1 @ TAIR |
+1 | 7e-95 | 317 | 155/246 (63%) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 |
BRACH PP3 | Bradi2g05226.1.p | +1 | 0.0 | 454 | 212/227 (93%) | pacid=32776210 transcript=Bradi2g05226.1 locus=Bradi2g05226 ID=Bradi2g05226.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1932 bp)
>BART1_0-u18690.015 1932 150831_barley_pseudomolecules GTGCCATTTACGTCCAAGGCAGCCATCTCTCCAACTCGAGGAATCATGTTGAGCAGAATT GGGTCTGGGACCAATGATGAAGATGAGTAGATGACTGAGCCCTTGGATCCTGATCCAAGG GTCAGAGTTGGCGATTAGATGTGTTCCTATACTATCTTATTTCCCCAAGCATCTGGAATC ATTCCATTCCATCCCATTCTCAAATCTCAAAGTCCAGGATGGTTCCATTCCAGTCTACTT CATTCCTCAAACCACTAACGGTTTTAGAGTTGAAATCCTTTTTCTGACTCTGTTAAGGGC TGGGAATGTAAACGAGACTTCTTTTTAGAAATATGTTGCCAAGGCTATGCAAAATTTGTT CCATTGGCTGGTTGACCTCCTCTCTTGTCAATTTATGGCAATATTTCTTGTTTTAAAATT TATTAAAATGACATCTATAATAATGTCCCTTTCCTTCTTTCGACTTTCCTTTTGCTATAT TTTGCAATGCAGAGACGTTAAGCGCCTATGGTTGGAACTGGTTGATATGATATCTGGTCA CATTGTGGGATGCAATCCCCCCTTAGTGGGGGGTGATTGAAGAAGTCAACAATAGGAGAA CTTGCATCTTGCTGAAGTTTTCTGTTTCTTGAGCAGGCTCTTAAACTACCAAGTATGTCA GCGTCAAATGGGAAGTGGATTGATGGACTCCAGTTCTCATCACTGTTCTGGCCCCCGCCA CACGATGCGCAGCAGAAACAGGCACAAATTTTAGCCTATGTTGAGTACTTTGGTCAGTTC ACATCTGACAGCGAGCAATTCCCGGAGGATGTAGCTCAGCTAATTCAAACTTGCTATCCA TCAAAAGAAAAGCGGTTGGTAGATGAAGTATTAGCAACTTTTGTTCTCCATCACCCCGAG CATGGTCATGCAGTTGTACATCCAATTCTTTCACGCATCATAGACGGGACACTGAGTTAT GATAGTCATGGTTCCCCATTCAATTCCTTCATCTCCTTATTTACCCAAAGTTCTGAGAAA GAGTACTCAGAGCAGTGGGCCTTGGCCTGTGGAGAGATTCTTAGAGTTCTAACTCACTAC AACAGGCCAATCTTTAAAGTTGCAGACTGTAACAACACCTCTGACCAGGCTACAACAAGT TGTTCTGCACAGGAGAAAGCTAATTACTCTCCAGGAAATGAACCTGAACGGAAGCCATTG AGGCCATTATCTCCTTGGATCACAGATATTTTGCTAACTGCACCTTTAGGCATTAGAAGC GACTATTTTAGATGGTGTGGTGGAGTTATGGGAAAATACGCAGCTGGTGGAGAATTGAAG CCTCCAACAACTGCCGAGGAGCTGGTAAGCACCCACAACTCATGCCATCCACCCCAAGAT GGGCTGTTGCCAATGGAGCTGGAGTTATTTTAAGTGTCTGTGATGAGGAAGTAGCTCGTT ATGAGACAGCAAACTTAACCGCGGCAGCTGTTCCCGCCCTTCTGCTACCTCCACCGACAA CACCCTTGGATGAGCATTTGGTGGCAGGGCTACCCCCTCTTGAGCCATACGCTCGCTTGT TTCATAGATACTATGCAATTGCCACACCAAGTGCTACACAAAGATTGCTTTTTGGTCTTC TTGAAGCACCACCATCATGGGCTCCAGATGCACTTGATGCAGCAGTTCAGCTTGTTGAAC TCCTTCGGGCAGCTGAAGATTATGCTACTGGCATGCGGCTTCCAAAAAATTGGTTGCATC TTCATTTCTTGCGTGCGATTGGAACTGCAATGTCTATGAGGGCTGGTATTGCTGCCGATA CAGCTGCTGCGTTGCTTTTTCGCATACTATCCCAACCAACGTTGCTTTTTCCTCCACTAA GGCATGCTGAAGGAGTTGAAGTGCAACATGAACCACTGGGTGGCTATGTATCATCATACA AAAGACAGGTAT
Protein Sequence (220 aa)
>BART1_0-u18690.015 220 150831_barley_pseudomolecules MVWWSYGKIRSWWRIEASNNCRGAGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETA NLTAAAVPALLLPPPTTPLDEHLVAGLPPLEPYARLFHRYYAIATPSATQRLLFGLLEAP PSWAPDALDAAVQLVELLRAAEDYATGMRLPKNWLHLHFLRAIGTAMSMRAGIAADTAAA LLFRILSQPTLLFPPLRHAEGVEVQHEPLGGYVSSYKRQV