- Transcript BART1_0-u11397.009
- Transcript IDBART1_0-u11397.009
- Gene IDBART1_0-u11397
Exon Structure of BART1_0-u11397.009
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr2H | 1 | 405593990 | 405593791 | + |
chr2H | 2 | 405594558 | 405594075 | + |
chr2H | 3 | 405594729 | 405594650 | + |
chr2H | 4 | 405594910 | 405594845 | + |
chr2H | 5 | 405597762 | 405595025 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0.165754 | 0.622256 | 0.114103 |
morex | ETI | 3.21807 | 3.06655 | 3.51861 |
morex | LEA | 1.73863 | 7.12743 | 4.97214 |
morex | EPI | 3.83918 | 5.33345 | 3.00746 |
morex | ROO | 0.207471 | 0.383439 | 0.0632797 |
morex | ROO2 | 0.236894 | 0.090347 | 0.140608 |
morex | NOD | 0.325339 | 0.622175 | 0.369425 |
morex | RAC | 0.355622 | 0.188089 | 0.167736 |
morex | INF1 | 0.07976 | 0.373823 | 0.372247 |
morex | INF2 | 0.295224 | 0.505249 | 0.239161 |
morex | CAR5 | 1.50859 | 0.814942 | 1.3501 |
morex | CAR15 | 0.780674 | 1.08524 | 1.49165 |
morex | LEM | 0.0411762 | 0.0491057 | 0 |
morex | LOD | 0.0474721 | 0.0319762 | 0.0990361 |
morex | PAL | 0.184023 | 0.121231 | 0 |
morex | SEN | 6.11349 | 8.48602 | 9.06084 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os07g05010.1 | +3 | 4e-39 | 152 | 104/217 (48%) | protein|helix-loop-helix DNA-binding domain containing protein, expressed |
TAIR PP10 | None | - | - | - | - | - |
BRACH PP3 | Bradi1g58230.1.p | +1 | 9e-60 | 211 | 136/227 (60%) | pacid=32794195 transcript=Bradi1g58230.1 locus=Bradi1g58230 ID=Bradi1g58230.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3568 bp)
>BART1_0-u11397.009 3568 150831_barley_pseudomolecules CAACTCTTCTCTCCTCTTCTCTTCTCTCGTCCTTTTATTATTCCCGAGAAAATCGAACCC AGCTAGACAGTCCACAGCTCTGGCACACAGCTTCGCTCTCCGCCGGTTTCTGCTCAAGTG GAGAGGCCCGTCAGCTCGATCGGTTCCAGGATCATGGACGACGGCGCAACACCGCCGCCC AACCACAAGAGGCACCTCCCACTGCGGGAGGCGGGCGGCGACCTCGTGGAGCTGCTGTGG CAGAACGGAGCCATCGTAGCGCAGGCGCAGGCGCAGACGCCGCACCGCCGGTGTTCCCAG AGCGGCGCGGCGAGCGGCGTCACCGCGGAGGACGCGACCGCGTGGTTGATCCCGGACGGC GGCGGCGGCAGGGACCTGTACTCGCACCTCTGGCACGGCGTCGCCGACGGGGATGCGGGC GCGCTCGTGGCGGGGAGCGGCGGCGCCGGGACGAGCTTCTGCGGGAGCAACGCGGTGACG GCGCCGGCGCTGCTGCCATCGCCGGGCTCGTCCGCAGCGGGAGGCCAAGCGCTACTGTTC AAGAGGGGGAGGGACCAACTGGATAGCCGCCGAGAGGACGAACTGGATACCGACGACTGT GAGGCCGTCAATGAGACCCGGCCGCAGCGGCCGGCAGCGAAGCGCAGGACTCGTGCTGCC GAGGTCCATAACCAATCAGAGCGGAGAAGAAGGGATCGGATCAACGAAAAGATGAAAGCA TTGCAAGAACTCGTACCCCATTGCAACAAGGTACCAAAGAAACTAGCGACAAGGCGTCCA TTCTAGACGAAGCAATCGAGTACTTGAAGTCTCTGCAACTGCAAGTTCAGATCATGTGGA TGACTACTGGGATGACGCCCATGATGTACCCTGGTGCTCACCAACTCATGTCGCCGATGG CCGTGGGCTTGAACTCAGCGTGCATTCCCACGGCGCAGAGCCTTAGCCAGCTGCAAAAAA GGGTAGCACCGTTTATGAACAATCATCTCCCCGATCAAATGCCTCAGGTCCAATCTCCAG CTATCGATTCCCTCGATGTGGCAAACCAGATGCAAAACAATGGTGTCTGTGGTGAGCCAA GAAACCCTTTCCTGCATCCAGACGACACGCTAACAGCGGCATCTCAGGTTATTACGACAC AGTTGATCTCCTCCTGATCTATCAGACTTTTACTCCTGTTAGCTTACGCTGTCGATTCCT CACAGCTTCCGGGTATGTTGCCCTATGCATCTCAAAAGGCACAACAAAACCAGAATCATC AGTTACTGCCTAGCATAGACATGCCAGCTTCAGGACCCTGCCCGCCATCTTTTGCTGACG GAACGGGAAAATAAGGCCAGGCAGTTTCAAGCAAGATGATTTACTGGTCAGTGTAAAGTT ATTTTTCTTATCTTATTTTCACGTAATAAATTTTGTTACCGATGAACTAAAACTTCAATA GACATGTATATATCAGTAGATGAATCTCCCAGCAATACAAAGTTTGCTATCAGTAAACTG AAACTCCAATTTCCTGCAAAACAAACGTCGTGCTTTTAGTTCAAATTTGATTTTGGGACG GAGGGAGTACATGCTATCATTATTTCCTGCGCTTAAGCGTAGCCACTTAGTGTGGAAGCT ACCAAATTGCGGTCGCCGGATGGATCGGTTCTTGATATTTTGTTCCCCTTTGGCACCTTC CGGGTCCTGTCCAATCAGTAGATTAACTCTGATCGTGGCGGTTGTGCATCCGTTTCACTC TTTCGCTGCTACATTCAATAGACTTTTTTGTCAGATTAGAAAAACAAGCCCCACTAGCTC ACAAGCAATTGGGTTGAGCATCGCTCTCTTGATGCAGACAGGACAAGGAATGCAACAATT ACTTGCATGAGATCAGCAACGAGTGAAAATACTACTAGTAATAGCCAGATCAGATCCTTG ATGCTATCCCAACAAGCAATTTATGCATAGTGTTATTGCCCAGAATTATCGTCATTGAGA CAGGATCATTGGGCCGATGTAGAGGCTAATGATATACGGTACTAGTTTCAGATAACCCAG GACCAATAGAACCTTATATACTAATCAAGTTCTTTGGTTTAGTATATCTTCATGTGGAGG CTTATGATATACTCCTGTTTCAAATTAGTTGAAGTTCTATGTTTGTCCTAAGTAAAAACG TCTTTAAGTTTTACCAAGTTTATAGAACAAATAAATCAACGCCAAATTAGTATCAGTATA ATCTATATAAAATATATTTTATTTGATTTTGTAGATCTTAGCAGATTTTTCCATAGGACA ACCCTAGAACTTCAATTAATTTGGAACGGAGGGAATACTAGTTCGCATAACCCAGGGCGT CTATGGCCTTGTATACTAATCAAGCTCTATACTTTATTTTTTAGATTGGCCATCTATCTA TATGATAATATAAGATGCCAAGGAAACTCAGACATGTCCTTCACATCCCTAACGAACGGC CAGAATATCACCTGGCATATATAACTCGCAGGTATTCCCAGGAAGCAATAAAATACTGAT TACGATGCTAAGTTTAACACTTTCTTTAACTTATCATCTTTGACATGTTGCTGAAATTTT TGTGTAATGACCAACCAGGGGGGTTGGATACAGGAGGTCAGAGCAAACTAGTCATAGAAG AGAAGAGATATGGTACCAAGACACTCTGTGCTGTAAGGCCAGGGGCAGATCATGCAACAT TGAGCCTTGGTGGCACCACTAAGCAACCAACACGTATGGGCCCGAGATCATGCGGAATTG CGGATAGCAGATACTATTCTTATCCGAAGAATAGTCTTGAGCACCACCTTTCTATTTATG GAAGGATTTGGTCCATGGGAGATGAACTTGGGGCTTTGACAGGGACAACAAAAGATGATT GTGCCGATATGCTGCAGATCTGGAGATGACATTGTTGGAGCCAGGATCTGCACAATGACA CAACTTGTGCACTTCTGCTCGTCTTTCCACCGATGTAACTCCACTCCACTGGTGAGTCCT AATGGGACTGTCCTGTTGACCCGCGGTCGAGCTATCGATATTCGAATGGACGGCTGAAAC AAGGGTAGGCAGAAGAAACTTGTGCTTTTCGGACACAATTGTAGATCAGGTTTGCATATG CCTTTCAGAAATTCAGACAAGTGGTACATGAAGATCATTCTCATTCGGCCATCAGGATCG CGAGATTATCGCCTTACCCTTAACCCTGGAAAGATTGTACCGCATGTGGTGATGTCCTGT TACAAGTTAATCAGGACTGTGATGGGCATCATCCGTTTCGTCACAGGGTAATTAGTCTCT GAAAATATCAATGATGCTGCATCTTTTGTTGTGTTATACTCCAATTGTGAGTCAGCTTCA GTCGCCGTCAGGGGAGACTGGGACTTTGCTTCGCATTTACACGTCCAGATTTGGTTGTCA TGCTCGTATCATAGCGATTGATGTAGATGCTTGGCAATTTGGAGGACAGATATTCATACC ATGAAAAAAAAGAGGACAGATATTCATTCTTTGCGTCTTGCTCTTGCTTCTATATATATC TAGGAAACCAGAACTAGTCAAAATTTCA
Protein Sequence (210 aa)
>BART1_0-u11397.009 210 150831_barley_pseudomolecules MDDGATPPPNHKRHLPLREAGGDLVELLWQNGAIVAQAQAQTPHRRCSQSGAASGVTAED ATAWLIPDGGGGRDLYSHLWHGVADGDAGALVAGSGGAGTSFCGSNAVTAPALLPSPGSS AAGGQALLFKRGRDQLDSRREDELDTDDCEAVNETRPQRPAAKRRTRAAEVHNQSERRRR DRINEKMKALQELVPHCNKVPKKLATRRPF