- Transcript BART1_0-u01504.001
- Transcript IDBART1_0-u01504.001
- Gene IDBART1_0-u01504
Barley RTD
Exon Structure of BART1_0-u01504.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr1H | 1 | 75454279 | 75451922 | + |
| chr1H | 2 | 75455702 | 75454369 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000715148 | 0 | 0 |
| morex | ETI | 0 | 0.335069 | 0 |
| morex | LEA | 0.582402 | 0 | 0 |
| morex | EPI | 0 | 0 | 0.000000000788065 |
| morex | ROO | 0 | 0.321083 | 0 |
| morex | ROO2 | 0 | 0 | 0 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0 | 0 | 0 |
| morex | INF2 | 0 | 0 | 0.0000066297 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0.00000000621617 | 0 |
| morex | LEM | 0 | 0 | 0.250618 |
| morex | LOD | 0.304682 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0.00485887 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os09g08590.1 | +3 | 7e-114 | 246 | 136/316 (43%) | protein|transposon protein, putative, unclassified, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3692 bp)
>BART1_0-u01504.001 3692 150831_barley_pseudomolecules ACTGAATTTCTGCTGCAGTTTTGTTAAAAGAATGATCTGAACTTTATGCACACGGAATCT TTTGAATTTTTTATACTGTCATAACTGAATGTTCTGAATTTTTGACACTATCATAACTGA ATGTTCTGAATTTTTTGTGCTGTCATAACTGAAGTGTACACTGAATGTTCTAAGCTTTTT ACACATTGTTTTAACAGATAGCACTTAATTTGTTGGACAATGTATGAGCTTAAATCACTC CTAATTGTTGTGAACCAAAACTTCTGAATGCAGGAACTTTTGATGGTCTATTTAATGTTG CGATTCAGCACAAGGGTTTTCTCTGTGCAAATGGGAGCAACAGGAAGTACATGGACTATC AAGTTGACTGGTTTGACAATTGTGATAGTGACACATGGTCAACCGTTTGGACAGATGATT TTCTACAGCAGTTGGGTCATGACAGATCTCACTCGAACCATGATGTGTATTGGCTGCAGC CTGGTAAAACATGTGAAGATGGATTAAAGCTGCTGACCTGTGATGCAGGCATGCTAGCCA TGATTGCTGCATCAGCAGAGCACAGTGCACAAAAATCTGGTTTTGATAGTTGACCATGGT GATACTCTAAGCAACTTACTAAGATATGATGTGCTCCTTGATGGGGTACTTGAACAACCA ATATTTATCAGTCCCAGCAAGTGTAGCAAGGGAAAGGAGGTTGTGGGTTCTTGCCAAGTT GTTGGAAGAAATACAAGAAATAAGAGAGCAAGGGGTTCTTCTTTTATTGATGCATGCTCT TCTTCGTGATGTCCTGTTGAAGTGGAAGAGCAGGAACAAGATGAAGGCAATGATGATTCT ACGGATGAAGATTTCTATGGAAGTGATTATGAAGTAAATGAAGGTGATGATGACCTCTTT GAGCAGAATGTGGACAATGAAGTAGATGATCACAAAGAGAATCAGATTGTAGATGACTTT GAAGGAGAATTAGCTGAAGATGCACTGGATGACTCTCATTTAAACCTAAGTAAAGAAGAG AGAGAGAGAGAGAGAGAAAATCAAGTACAAATTCAATGTGTTTAATTCAAAGACTGACAT GAATTCACCGGAATTCAAACTTGGTATGGTCTTTGGTGATGCGAGGGAATTGAGAAAAGC TTTAGATTCTTATGTAGTGTGGAACAGGGTGAAGGTAAGGAAGATTAGGAATTCATCCAC CAGATTAGATGTTGTTTTCATAGATGGTTGTCCATGGTACATGAATGCCTCCAAGGATGC GAGGACAAGCAGTTTCTTCATAATGAAGTTTTGTGGAATTCACACTTGCAGTGAAGTCGG GAATGTCAAATCCTTGACTGCACCATTTCTCTAATAAGTTCAAACATGAGTTCAGGGATA ATGAGTAGATGCCCTTAAAGAAATTTGGTGCAAAAGTGCAGACGGAGTACAATATGCTTC CAACCAGAAGTAAGATAGGAAGGGCAAGAAGGGCAGCAGTGAAGCAGATTAGAGGTGAAG ATGATGACCAGTACAAACTTCTGTTGGATTTTGGCCAGGAACTTAGAAGATCTAACCCAG ACAGCAAGTTCTATCTTTGCACAAAGGAAGTGAAGAAGGAGAAGCATCCATTCCCAAAAG AACACTTCTCTACTCTATACTGGTCCTATGATGCTTGCAAGAGAGGCTTCCTTATGGGTT GTAGGCAAATAATCTTCGTTCATGGCTGCCACATAAAGACAAGGTACAAAGGGAATTTGC TAACTGCAGTTGGAATTGACCCAAATGACTGCATATTTTCTGTTGCTTTTGGTTTGGTGG AAGTTGAGTCAACTGATAGTTGGGATGGTTTCTGGCTAGTTTAAAGGTTGATCTGCATAT TTGCAACACATCCCCATTCACAATCATGAGTGACAAGCAAAAGGTACTGAAAATGCTCGC TGAATTTTGTTGCACACTGTCATAACACAACACTGAATTTTGCTCTGAACATGTTCACTA AATATTGCACACAACATTGAATTTTGCTTTGGTTATGCTATCTCAATGCTCTCTCGTGTA ATATTCTTTATTGGTAGAGTTTAATAGCTGCTGTCCAGAAGGTATTTCCTGATGCCGAAC ACAGATTTTGTGTGAGGCATCTTTACCAGAATTTTCACAAACTTCACAAGGGTCAAACAC TCAAAAACAACCTATGGGCCATTGCTAGATCAACTACTGTTGAGGCATATACCAACAATA TGGAGAAGATGAGAGTTGATAGCCAGGATGCATATAATTGGGTTGCGAAAGTGCCACCAA GGACATGGTTAAAGCATTCTTCAATCCTTTCCCAAAATGTGACATTCTTTTGAACGACAT GTCTGAAGTATTCAACAGCTATATCTTAGAAGAAAGAGAACTTCCAATTGGATCCATGCT AGGGAACATTCAGAATAAGTTAACCCACAGATTTGAGTCAAAAAATAGGGAGGCAAGTGA GAAGTGGACAGGGAGATTGTGCCCAAAAATGCAGAAAAAGGTAGAAACGTATGTTGAGTG GGCTAAGAACTGCACAGTACTGGATGCTGGACAAAGGGTTTTCAAGGTGAAAGGGTTGAA CAACTCATATATTGTGGATTTAAACACAATGTGTTGTGATTGCAAAAGGTGGGAGTTGTC ACCCTTCCCTGGGAGATTGAGTCTCTAGCTGCAGCAATAAATGTTACTCAGGAAGGGGGA TATTTTGTCTGGGTAGGAATAATGACTTCTCTCCTAAACAAGGAAATGAGGTAAAGTGGG CACAGAAATAATACTCCCTCCGTTCCTAAATATTTGTCTTTGTAAAGATTTAAATATAGA CTACATACAAAGCAAAATGAATGAATCTATAATCTAAATTATGTCTATATACATCTGTAT GTTGTTCATAGTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAGAACATC ACATATGAAAAGGATATGATGACTTCTCTCCTAAACAAGGAAAACCCTAAACCCTAAACC TTCTTAAGAAAGAAGTTGCACAGGAGGATACCTCCCATCACAATGAAAAGCATCTACATG TCCATCACAATAAAAAGCATCTACCAAGCGAGGGCATTCTTACTTGAGTAGTGTTGTGTT GTCTTGTTGATGTAAGATTAGTGCTATGTTGTCTTGTTGATGTAATGGGATCATGTAATC CATCTTTTGTTGCAATAAGAATGAACATTTGGTTTGAGAGAAAAATATGATCAAAGTTAA CATCACATCCAATGATCGATAACAAAATTAACATCACATGATAAAAGAGACAGCCACTAC TCGAACCATCTATGCATGCATCATCACATATTCTTCGATCAAGTTCAACAAAAGTCATCA CATATTCTTCGATCAAGTTCAACAAAAGAGAGAACCACTACCGGAACAACTACTCGTGAA GTCCATGATCATTTTAAAATTTCCTTCAGTTCATCCTTACTTAGAATATCTCGATAGTAA ATGCTCATCAGTTCTAGCCTGACCTTTTCTGCGCCAGGAGGCACAGAGAATTGCTCGAGC GGCGGCATTGGGTCGCCATCGACCATCTCGTTGTACTTTTGTCAGTCGTAGATGCCACTA TCATTGACGAGCGCATGCAGGGATGCCGCTGCATAACTCTGCTCTGCAATTGGATTCATT GACAGCCTTGAGTCTTGTGTGTACGTTATTCA
Protein Sequence (151 aa)
>BART1_0-u01504.001 151 150831_barley_pseudomolecules MPLKKFGAKVQTEYNMLPTRSKIGRARRAAVKQIRGEDDDQYKLLLDFGQELRRSNPDSK FYLCTKEVKKEKHPFPKEHFSTLYWSYDACKRGFLMGCRQIIFVHGCHIKTRYKGNLLTA VGIDPNDCIFSVAFGLVEVESTDSWDGFWLV