Probe CUST_745_PI426222305 - General Information

Probe IDChip nameTranscript IDProbe Sequence
CUST_745_PI426222305 JHI_St_60k_v1 DMT400026179 AAATACAAACTTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG

All Microarray Probes Designed to Gene DMG400010090

Probe IDChip nameTranscript IDProbe Sequence
CUST_745_PI426222305 JHI_St_60k_v1 DMT400026179 AAATACAAACTTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG
CUST_1405_PI426222305 JHI_St_60k_v1 DMT400026181 AAATACAAACTTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG
CUST_1534_PI426222305 JHI_St_60k_v1 DMT400026180 AAATACAAACTTGGTTTGCTCACATATCATGATTTGCACATTAGGGACCCGAGAATCATG


Microarray Signals from CUST_745_PI426222305



TreatmentRaw signalRaw Std ErrNormalized signalNormalized Std Err
Control 1h18.2786.594741.529540.556684
ABA 1h7.964973.531090.8486580.379055
ACC 1h16.13084.086361.427710.398923
BABA 1h11.55254.914170.9637930.449819
Chitin 1h7.454023.432090.7828250.362581
Epi 1h10.13223.66611.048520.424947
SA 1h14.33344.13331.180070.557135
Me-JA 1h7.124783.684650.8183330.430426
Control 6h18.14645.852541.48570.501286
ABA 6h14.38036.068061.086390.56836
ACC 6h14.21647.086420.9327550.420922
BABA 6h20.24814.428141.694350.376842
Chitin 6h14.59927.374621.026220.524353
Epi 6h17.49634.892011.347670.417115
SA 6h30.726923.74731.496441.84268
Me-JA 6h8.395053.86320.7737140.377442

Source Transcript PGSC0003DMT400026179 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc02g089840.2 +3 2e-113 347 182/197 (92%) genomic_reference:SL2.50ch02 gene_region:46129231-46130747 transcript_region:SL2.50ch02:46129231..46130747+ functional_description:Transcription factor (AHRD V1 **-- D7MBD5_ARALY); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607
TAIR PP10 AT2G23790.1 +1 5e-54 191 88/135 (65%) Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400026179

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