Probe CUST_48903_PI426222305 - General Information

Probe IDChip nameTranscript IDProbe Sequence
CUST_48903_PI426222305 JHI_St_60k_v1 DMT400056336 CATTTACAGAATACATTTGGGTTGTTTGGTGGCTGGATAAGAAACATCCGATCATATATA

All Microarray Probes Designed to Gene DMG400021886

Probe IDChip nameTranscript IDProbe Sequence
CUST_48903_PI426222305 JHI_St_60k_v1 DMT400056336 CATTTACAGAATACATTTGGGTTGTTTGGTGGCTGGATAAGAAACATCCGATCATATATA


Microarray Signals from CUST_48903_PI426222305



TreatmentRaw signalRaw Std ErrNormalized signalNormalized Std Err
Control 1h596.07439.56132.116570.122733
ABA 1h381.39837.30271.522260.0887581
ACC 1h375.113149.4211.034430.55007
BABA 1h373.30685.07541.299820.20456
Chitin 1h234.45138.56060.9067060.0803393
Epi 1h322.17661.53641.281460.246614
SA 1h395.21548.03581.349810.11846
Me-JA 1h182.99134.29920.7738380.0904372
Control 6h229.95261.70940.7435630.184691
ABA 6h221.87218.07760.7393320.0442109
ACC 6h253.6315.22130.7861140.0926927
BABA 6h326.94530.7721.031640.0625417
Chitin 6h297.99517.60580.9970770.0588532
Epi 6h298.02124.64060.936330.0857401
SA 6h225.11365.2210.731840.172273
Me-JA 6h313.09690.55841.039290.212698

Source Transcript PGSC0003DMT400056336 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT5G48050.1 +2 6e-08 53 37/116 (32%) CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19472661-19473770 REVERSE LENGTH=369

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400056336

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