Probe CUST_43199_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_43199_PI426222305 | JHI_St_60k_v1 | DMT400042667 | AATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACC |
All Microarray Probes Designed to Gene DMG400016551
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_43181_PI426222305 | JHI_St_60k_v1 | DMT400042669 | CAGTGATGATCTCCAATTCCATCAAACCCACCCATCAACTACAAGAAGAAGCATTTTCAG |
| CUST_43199_PI426222305 | JHI_St_60k_v1 | DMT400042667 | AATAGCAAATCAAATACAGTTCACTCAGCCCACAGTGATGATCTCCAATTCCATCAAACC |
| CUST_43170_PI426222305 | JHI_St_60k_v1 | DMT400042668 | GCCTTGAAAAATCGTCGTATTGCTGATATAATGTCTCTTAGTTGAAGTGAAGTTTTGTGA |
Microarray Signals from CUST_43199_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 7136.83 | 1002.45 | 1.53552 | 0.14143 |
| ABA 1h | 4324.85 | 453.042 | 1.06015 | 0.082435 |
| ACC 1h | 6742 | 723.018 | 1.42095 | 0.082042 |
| BABA 1h | 5674.44 | 750.803 | 1.26635 | 0.0731169 |
| Chitin 1h | 4616.22 | 296.007 | 1.12053 | 0.0790863 |
| Epi 1h | 5463.76 | 339 | 1.37811 | 0.0795694 |
| SA 1h | 6322 | 609.453 | 1.33702 | 0.0771959 |
| Me-JA 1h | 3203.36 | 185.173 | 0.859094 | 0.10188 |
| Control 6h | 3699.75 | 756.004 | 0.773468 | 0.112237 |
| ABA 6h | 995.547 | 57.7024 | 0.204797 | 0.0118442 |
| ACC 6h | 4908.25 | 488.134 | 0.928619 | 0.0732343 |
| BABA 6h | 4179.88 | 241.918 | 0.816457 | 0.0471436 |
| Chitin 6h | 3982.15 | 229.956 | 0.819847 | 0.0473395 |
| Epi 6h | 5050.06 | 451.111 | 0.97335 | 0.156377 |
| SA 6h | 3214.67 | 185.908 | 0.711214 | 0.058028 |
| Me-JA 6h | 3441.37 | 223.007 | 0.754145 | 0.0435465 |
Source Transcript PGSC0003DMT400042667 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 | AT5G09960.1 | +1 | 9e-30 | 105 | 57/98 (58%) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112 |