solarray - Potato Microarray Database

Source Transcript

DMT400069793

Source Contig ST4.03ch05
Source Gene DMG400027140

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

solarray

Links

Probe CUST_30341_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_30341_PI426222305	JHI_St_60k_v1	DMT400069793	GGACCATTCTACTTGCCCTCCCAAACTCCCTCCATATTTTAGTACTTTTTATGGTTTGAT

All Microarray Probes Designed to Gene DMG400027140

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_30341_PI426222305	JHI_St_60k_v1	DMT400069793	GGACCATTCTACTTGCCCTCCCAAACTCCCTCCATATTTTAGTACTTTTTATGGTTTGAT
CUST_30309_PI426222305	JHI_St_60k_v1	DMT400069794	GGACCATTCTACTTGCCCTCCCAAACTCCCTCCATATTTTAGTACTTTTTATGGTTTGAT

Microarray Signals from CUST_30341_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	2608.36	481.344	1.32834	0.155151
ABA 1h	2632.29	412.942	1.52491	0.161461
ACC 1h	2349.02	587.192	1.12503	0.234972
BABA 1h	2006.72	327.111	1.06625	0.0888929
Chitin 1h	1595.39	103.565	0.930169	0.0537352
Epi 1h	1652.12	95.7507	1.00173	0.057868
SA 1h	2860.13	617.953	1.40449	0.291134
Me-JA 1h	5196.24	559.82	3.3134	0.191311
Control 6h	1151.7	192.704	0.586933	0.0499108
ABA 6h	2149.73	135.959	1.06059	0.0612567
ACC 6h	1198.51	69.4863	0.548714	0.0664189
BABA 6h	1249.13	72.2581	0.587242	0.0339487
Chitin 6h	1215.62	70.4287	0.600073	0.0346915
Epi 6h	1187.92	68.8619	0.553409	0.0536094
SA 6h	1164.92	180.17	0.605055	0.0432229
Me-JA 6h	2271.3	131.188	1.20093	0.0963801

Source Transcript PGSC0003DMT400069793 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT3G55550.1	+3	3e-171	508	252/399 (63%)	Concanavalin A-like lectin protein kinase family protein \| chr3:20600019-20602073 REVERSE LENGTH=684

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400069793

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