solarray - Potato Microarray Database

Source Transcript

DMT400010395

Source Contig ST4.03ch06
Source Gene DMG400004061

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

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Links

Probe CUST_28693_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_28693_PI426222305	JHI_St_60k_v1	DMT400010395	GCTTCCATTTATTTCATCTGAAGTGTCTTGTAGAGTTGCTTTTTATATATGGCCTATCCA

All Microarray Probes Designed to Gene DMG400004061

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_28693_PI426222305	JHI_St_60k_v1	DMT400010395	GCTTCCATTTATTTCATCTGAAGTGTCTTGTAGAGTTGCTTTTTATATATGGCCTATCCA
CUST_28740_PI426222305	JHI_St_60k_v1	DMT400010394	GCTTCCATTTATTTCATCTGAAGTGTCTTGTAGAGTTGCTTTTTATATATGGCCTATCCA

Microarray Signals from CUST_28693_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	100.954	32.0573	1.97737	0.531036
ABA 1h	53.9234	4.3325	1.30826	0.105142
ACC 1h	113.347	18.8406	2.31466	0.375397
BABA 1h	69.3789	8.42031	1.52663	0.116949
Chitin 1h	40.6638	5.71115	0.951713	0.0927802
Epi 1h	58.9652	5.57251	1.45302	0.138026
SA 1h	81.5087	21.3448	1.57819	0.419189
Me-JA 1h	145.871	18.264	3.77917	0.240153
Control 6h	37.4976	12.3791	0.719186	0.207522
ABA 6h	7.86282	3.34673	0.150107	0.0725833
ACC 6h	22.1411	4.11582	0.399461	0.0800738
BABA 6h	19.2299	3.86906	0.355152	0.0769053
Chitin 6h	16.8952	4.14201	0.317952	0.0974791
Epi 6h	14.9789	3.89273	0.263565	0.101581
SA 6h	14.5528	5.5087	0.270696	0.0955149
Me-JA 6h	43.9102	4.09351	0.944143	0.0920917

Source Transcript PGSC0003DMT400010395 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT5G08130.5	+3	4e-49	138	99/220 (45%)	basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:2606655-2609571 REVERSE LENGTH=532

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010395

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