Probe CUST_18346_PI426222305 - General Information

Probe IDChip nameTranscript IDProbe Sequence
CUST_18346_PI426222305 JHI_St_60k_v1 DMT400055003 ATGCAGGTACAAAAATGTATCATAGTTAGGTTCTCTTTTCACCACTTTTTCCCCTTTTTC

All Microarray Probes Designed to Gene DMG400021345

Probe IDChip nameTranscript IDProbe Sequence
CUST_18346_PI426222305 JHI_St_60k_v1 DMT400055003 ATGCAGGTACAAAAATGTATCATAGTTAGGTTCTCTTTTCACCACTTTTTCCCCTTTTTC
CUST_18262_PI426222305 JHI_St_60k_v1 DMT400055002 GGGAATAGTCCTATTAAAAAATTCCCTTCTTCTGCTTCTCCAACTGTTTCACTTCATTCT


Microarray Signals from CUST_18346_PI426222305



TreatmentRaw signalRaw Std ErrNormalized signalNormalized Std Err
Control 1h1307.22240.9931.420250.173781
ABA 1h889.50268.02131.120480.138229
ACC 1h1237.92150.0441.331110.0769868
BABA 1h709.0253.80630.8195610.0474774
Chitin 1h546.73641.96050.6777210.0784051
Epi 1h644.00752.84130.8281190.0622884
SA 1h635.49636.87350.6925330.0599809
Me-JA 1h413.34124.1340.5662170.0752306
Control 6h1661.16442.2261.688520.417427
ABA 6h601.766152.120.5959580.179606
ACC 6h1066.54256.1320.9854240.10484
BABA 6h1258.14223.5011.222840.221852
Chitin 6h1585.13182.7311.64630.171833
Epi 6h1449.28277.2771.379570.420554
SA 6h1055.34194.9081.154210.117886
Me-JA 6h645.936197.2370.6598320.157986

Source Transcript PGSC0003DMT400055003 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG)None-----
TAIR PP10 AT5G12900.1 +1 2e-171 504 289/530 (55%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400055003

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