Probe CUST_18346_PI426222305 - General Information
Probe ID | Chip name | Transcript ID | Probe Sequence |
---|---|---|---|
CUST_18346_PI426222305 | JHI_St_60k_v1 | DMT400055003 | ATGCAGGTACAAAAATGTATCATAGTTAGGTTCTCTTTTCACCACTTTTTCCCCTTTTTC |
All Microarray Probes Designed to Gene DMG400021345
Probe ID | Chip name | Transcript ID | Probe Sequence |
---|---|---|---|
CUST_18346_PI426222305 | JHI_St_60k_v1 | DMT400055003 | ATGCAGGTACAAAAATGTATCATAGTTAGGTTCTCTTTTCACCACTTTTTCCCCTTTTTC |
CUST_18262_PI426222305 | JHI_St_60k_v1 | DMT400055002 | GGGAATAGTCCTATTAAAAAATTCCCTTCTTCTGCTTCTCCAACTGTTTCACTTCATTCT |
Microarray Signals from CUST_18346_PI426222305
Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
---|---|---|---|---|
Control 1h | 1307.22 | 240.993 | 1.42025 | 0.173781 |
ABA 1h | 889.502 | 68.0213 | 1.12048 | 0.138229 |
ACC 1h | 1237.92 | 150.044 | 1.33111 | 0.0769868 |
BABA 1h | 709.02 | 53.8063 | 0.819561 | 0.0474774 |
Chitin 1h | 546.736 | 41.9605 | 0.677721 | 0.0784051 |
Epi 1h | 644.007 | 52.8413 | 0.828119 | 0.0622884 |
SA 1h | 635.496 | 36.8735 | 0.692533 | 0.0599809 |
Me-JA 1h | 413.341 | 24.134 | 0.566217 | 0.0752306 |
Control 6h | 1661.16 | 442.226 | 1.68852 | 0.417427 |
ABA 6h | 601.766 | 152.12 | 0.595958 | 0.179606 |
ACC 6h | 1066.54 | 256.132 | 0.985424 | 0.10484 |
BABA 6h | 1258.14 | 223.501 | 1.22284 | 0.221852 |
Chitin 6h | 1585.13 | 182.731 | 1.6463 | 0.171833 |
Epi 6h | 1449.28 | 277.277 | 1.37957 | 0.420554 |
SA 6h | 1055.34 | 194.908 | 1.15421 | 0.117886 |
Me-JA 6h | 645.936 | 197.237 | 0.659832 | 0.157986 |
Source Transcript PGSC0003DMT400055003 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 | AT5G12900.1 | +1 | 2e-171 | 504 | 289/530 (55%) | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562 |