solarray - Potato Microarray Database

Source Transcript

DMT400066826

Source Contig ST4.03ch01
Source Gene DMG400025981

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

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Probe CUST_17781_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_17781_PI426222305	JHI_St_60k_v1	DMT400066826	CCTTGCTGCATATATTCTTCCATTGCTCCATGCCTACTTCCAAAAACAAAATCACTTTTT

All Microarray Probes Designed to Gene DMG400025981

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_17781_PI426222305	JHI_St_60k_v1	DMT400066826	CCTTGCTGCATATATTCTTCCATTGCTCCATGCCTACTTCCAAAAACAAAATCACTTTTT
CUST_17758_PI426222305	JHI_St_60k_v1	DMT400066819	CTGCTAGCACTTGCTTCTGGAGCACCCAATACTCGGTCGTTGCAGAATATTGTAATTCAA

Microarray Signals from CUST_17781_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	52.4858	8.57167	1.44465	0.206061
ABA 1h	41.5589	8.6972	1.27524	0.261176
ACC 1h	31.9859	7.04453	0.828661	0.153098
BABA 1h	58.6504	5.68869	1.70306	0.138596
Chitin 1h	34.064	8.0248	1.01329	0.301427
Epi 1h	31.2306	3.5779	1.01794	0.117775
SA 1h	51.3377	11.6833	1.33828	0.387246
Me-JA 1h	19.4927	4.6296	0.635779	0.124004
Control 6h	38.297	13.1619	0.9179	0.340791
ABA 6h	38.3909	7.84121	0.975088	0.165151
ACC 6h	28.3423	4.31642	0.682422	0.213225
BABA 6h	50.4196	11.814	1.18735	0.301259
Chitin 6h	30.3765	9.93876	0.689056	0.350856
Epi 6h	36.6217	17.6298	0.663192	0.644595
SA 6h	31.0692	17.9521	0.603981	0.735699
Me-JA 6h	44.7327	20.3076	1.04135	0.411786

Source Transcript PGSC0003DMT400066826 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT2G44980.2	+1	3e-130	427	249/412 (60%)	SNF2 domain-containing protein / helicase domain-containing protein \| chr2:18552343-18556669 REVERSE LENGTH=877

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400066826

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