Probe CUST_169_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_169_PI426222305 | JHI_St_60k_v1 | DMT400074733 | TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC |
All Microarray Probes Designed to Gene DMG400029059
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_4_PI426222305 | JHI_St_60k_v1 | DMT400074732 | TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC |
| CUST_169_PI426222305 | JHI_St_60k_v1 | DMT400074733 | TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC |
Microarray Signals from CUST_169_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 50.7682 | 5.84181 | 1.01707 | 0.130324 |
| ABA 1h | 69.8599 | 7.38431 | 1.58678 | 0.111645 |
| ACC 1h | 32.3481 | 10.2636 | 0.550567 | 0.208528 |
| BABA 1h | 63.9721 | 11.1458 | 1.30725 | 0.125964 |
| Chitin 1h | 42.8144 | 3.76248 | 0.965483 | 0.120016 |
| Epi 1h | 34.1633 | 9.16601 | 0.748836 | 0.181901 |
| SA 1h | 72.3673 | 13.8809 | 1.37727 | 0.239018 |
| Me-JA 1h | 45.0718 | 9.56584 | 1.07651 | 0.133463 |
| Control 6h | 44.4059 | 7.13453 | 0.874375 | 0.0811753 |
| ABA 6h | 117.842 | 19.6209 | 2.19121 | 0.244049 |
| ACC 6h | 40.9821 | 4.27481 | 0.718468 | 0.117446 |
| BABA 6h | 58.5584 | 6.96087 | 1.0467 | 0.0961857 |
| Chitin 6h | 49.8237 | 4.75602 | 0.942146 | 0.105708 |
| Epi 6h | 43.9208 | 5.17774 | 0.781048 | 0.120596 |
| SA 6h | 32.7184 | 4.15049 | 0.662092 | 0.0763566 |
| Me-JA 6h | 61.2146 | 11.2522 | 1.20344 | 0.137472 |
Source Transcript PGSC0003DMT400074733 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc01g058260.2 | +2 | 0.0 | 707 | 349/365 (96%) | genomic_reference:SL2.50ch01 gene_region:58770102-58774780 transcript_region:SL2.50ch01:58770102..58774780- go_terms:GO:0005515 functional_description:Poly(A) polymerase (AHRD V1 ***- Q56XM9_ARATH); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region |
| TAIR PP10 | AT3G06560.1 | +2 | 3e-152 | 463 | 241/436 (55%) | poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507 |