Probe CUST_1271_PI426222305 - General Information

Probe IDChip nameTranscript IDProbe Sequence
CUST_1271_PI426222305 JHI_St_60k_v1 DMT400001379 AAAGTGACGACAAGATCAGCGTATTTCTTGAATCGCCAAATGAACGATAGTATACAGATG

All Microarray Probes Designed to Gene DMG400000514

Probe IDChip nameTranscript IDProbe Sequence
CUST_1271_PI426222305 JHI_St_60k_v1 DMT400001379 AAAGTGACGACAAGATCAGCGTATTTCTTGAATCGCCAAATGAACGATAGTATACAGATG
CUST_1103_PI426222305 JHI_St_60k_v1 DMT400001381 GCTTTAGAGATCTTGATGGGTAAGTGATTATACTCTACAAATTTGAAGTGTGTGGGAATA
CUST_1110_PI426222305 JHI_St_60k_v1 DMT400001380 GCTTTAGAGATCTTGATGGGTAAGTGATTATACTCTACAAATTTGAAGTGTGTGGGAATA


Microarray Signals from CUST_1271_PI426222305



TreatmentRaw signalRaw Std ErrNormalized signalNormalized Std Err
Control 1h99.03314.39250.8867730.0683954
ABA 1h89.155520.03260.8739660.145056
ACC 1h111.2228.35140.9162450.200518
BABA 1h108.75923.79020.9833570.140698
Chitin 1h82.903615.19420.8149640.0851898
Epi 1h77.57535.423540.8159590.0573065
SA 1h109.09924.50720.9120360.193522
Me-JA 1h65.464112.91630.7065610.075601
Control 6h219.76891.18511.592410.799452
ABA 6h108.62115.64590.9159760.0793928
ACC 6h152.68724.19191.182820.132528
BABA 6h172.51528.97041.363660.209221
Chitin 6h154.83513.21531.319850.100107
Epi 6h177.86760.44491.291420.419215
SA 6h170.17924.16861.539870.0946763
Me-JA 6h177.59247.51961.495530.34528

Source Transcript PGSC0003DMT400001379 - Homology to Model Species (BLASTX to E-value < 1e-50)

DatabaseLink to BLAST HitFrameE-valueScore% IdentityDescription
Tomato (ITAG) Solyc02g086550.2 +1 0.0 721 352/379 (93%) genomic_reference:SL2.50ch02 gene_region:43791778-43797970 transcript_region:SL2.50ch02:43791778..43797970- go_terms:GO:0005515 functional_description:Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant
TAIR PP10 AT5G14550.1 +1 2e-177 504 246/380 (65%) Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4691321-4693732 REVERSE LENGTH=377

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400001379

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