solarray - Potato Microarray Database

Source Transcript

DMT400010462

Source Contig ST4.03ch07
Source Gene DMG400004087

Available Data

|Microarray Probes|
|Microarray Signals|
|Homologues|
|Spud DB GBrowse|

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Links

Probe CUST_12208_PI426222305 - General Information

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_12208_PI426222305	JHI_St_60k_v1	DMT400010462	CAAATATCACTGCTTTCTCTGGGAGGCTTCTCAAGACAGCTTTCATTGAGGTAAACACAA

All Microarray Probes Designed to Gene DMG400004087

Probe ID	Chip name	Transcript ID	Probe Sequence
CUST_12208_PI426222305	JHI_St_60k_v1	DMT400010462	CAAATATCACTGCTTTCTCTGGGAGGCTTCTCAAGACAGCTTTCATTGAGGTAAACACAA
CUST_12170_PI426222305	JHI_St_60k_v1	DMT400010463	GTGGTGTTTTTCACAAGAAATCTAAGTCAATGAAAGTCTACCTTCATGTCCTTTTCTAAC

Microarray Signals from CUST_12208_PI426222305

Treatment	Raw signal	Raw Std Err	Normalized signal	Normalized Std Err
Control 1h	6098.56	671.099	1.35711	0.14766
ABA 1h	5629.69	970.766	1.39286	0.140876
ACC 1h	6211.06	1877.22	1.23152	0.340455
BABA 1h	7200.26	792.856	1.66146	0.0959285
Chitin 1h	3579.04	367.04	0.888081	0.05128
Epi 1h	5194.45	350.501	1.34656	0.104531
SA 1h	21402.4	5329.48	4.43499	1.05439
Me-JA 1h	12311.8	1610.22	3.34425	0.260474
Control 6h	3355.17	1123.69	0.658294	0.20632
ABA 6h	1721.82	148.529	0.362279	0.0209306
ACC 6h	2250.95	260.208	0.436347	0.0883239
BABA 6h	3678.02	288.97	0.735864	0.0816136
Chitin 6h	2162.62	135.778	0.456091	0.0328977
Epi 6h	2472.47	176.579	0.491721	0.0545218
SA 6h	3964.5	627.333	0.877508	0.0506707
Me-JA 6h	6760.84	1057.8	1.49012	0.334925

Source Transcript PGSC0003DMT400010462 - Homology to Model Species (BLASTX to E-value < 1e-50)

Database	Link to BLAST Hit	Frame	E-value	Score	% Identity	Description
Tomato (ITAG)	None	-	-	-	-	-
TAIR PP10	AT4G29930.3	+2	5e-31	119	75/155 (48%)	basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:14644108-14645505 FORWARD LENGTH=263

Link to Spud DB Genome Browser for Transcript PGSC0003DMT400010462

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