Probe CUST_1100_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1100_PI426222305 | JHI_St_60k_v1 | DMT400001281 | CTTGGCCTGAAAATGGCTGCAATCTTACAAACATGTATTCTGTCTTTACAGTATATATCA |
All Microarray Probes Designed to Gene DMG400000486
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1251_PI426222305 | JHI_St_60k_v1 | DMT400001280 | GCAGAAGTGTTCATTTGAACTGCTTTTTCATTTACCTCTTTTTGAACATTTCCAACCTCA |
| CUST_863_PI426222305 | JHI_St_60k_v1 | DMT400001279 | ATGATAAGGCTTTGAAGCTTGAAGAGTTTGGAGTGAGTGGCTCAGATGCTGAGAGTGTAT |
| CUST_1100_PI426222305 | JHI_St_60k_v1 | DMT400001281 | CTTGGCCTGAAAATGGCTGCAATCTTACAAACATGTATTCTGTCTTTACAGTATATATCA |
Microarray Signals from CUST_1100_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 5162.6 | 693.31 | 1.04383 | 0.0689817 |
| ABA 1h | 3907.47 | 321.317 | 0.903069 | 0.0521437 |
| ACC 1h | 4227.77 | 755.486 | 0.816587 | 0.102428 |
| BABA 1h | 4260.98 | 929.001 | 0.858791 | 0.127433 |
| Chitin 1h | 3499.19 | 311.306 | 0.794365 | 0.0458684 |
| Epi 1h | 3571.6 | 287.69 | 0.84331 | 0.0560211 |
| SA 1h | 4872.63 | 570.107 | 0.963249 | 0.0556171 |
| Me-JA 1h | 3065 | 371.437 | 0.761934 | 0.0439982 |
| Control 6h | 7965.64 | 1287.71 | 1.58805 | 0.147238 |
| ABA 6h | 5760.68 | 687.857 | 1.09836 | 0.0779943 |
| ACC 6h | 6875.99 | 1126.12 | 1.20067 | 0.0693242 |
| BABA 6h | 7338.5 | 728.996 | 1.33623 | 0.116736 |
| Chitin 6h | 7607.47 | 900.85 | 1.45128 | 0.124975 |
| Epi 6h | 6823.31 | 781.319 | 1.22991 | 0.163419 |
| SA 6h | 6319.12 | 372.955 | 1.3098 | 0.0845567 |
| Me-JA 6h | 4233.01 | 1119.75 | 0.813601 | 0.155819 |
Source Transcript PGSC0003DMT400001281 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g086710.2 | +1 | 3e-156 | 452 | 237/245 (97%) | genomic_reference:SL2.50ch02 gene_region:43930486-43935980 transcript_region:SL2.50ch02:43930486..43935980+ go_terms:GO:0005524,GO:0016656 functional_description:Monodehydroascorbate reductase (NADH)-like protein (AHRD V1 **** Q0WUJ1_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
| TAIR PP10 | AT3G27820.1 | +1 | 1e-112 | 340 | 175/251 (70%) | monodehydroascorbate reductase 4 | chr3:10315249-10317881 FORWARD LENGTH=488 |