Microarray Probes on PGSC0003DMT400097397
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1216_PI426222305 |
JHI_St_60k_v1 |
GAGGCTGATGATTATGATCTCAAGAATTTTTGTTTTGATTCCAAGCGTAAACACTCTTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400097397
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400097397 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088170.1 |
+1 |
0.0 |
1053 |
520/540 (96%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch02 gene_region:44903957-44905576 transcript_region:SL2.50ch02:44903957..44905576- go_terms:GO:0034046 functional_description:Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat |
| TAIR PP10 |
AT5G15300.1 |
+1 |
0.0 |
625 |
294/528 (56%) |
Pentatricopeptide repeat (PPR) superfamily protein | chr5:4968384-4970030 REVERSE LENGTH=548 |
Transcript Sequence (1620 bp)
>PGSC0003DMT400097397 1620 pgsc_dm_v3.4
ATGATCAAAAAGACAATAGCAAGCAGGAGTTCAAATCTTCACCGACAATCATCACTATGG
AGCAAATGCAAAGATGTCCAATCCCTAAAGCAAATTCATGCTTTGATGATCATCAATGGC
TTCAACTCCAATCGCATTGCTCTCAGGGAGCTCATACATGCTTCTGCTGTTACTTTCTCA
GCATCTATTCACTATGCCCACAAGCTGTTTGCTCAAATTACTCAACCAGATCTCTTCATG
TGGAACACCATGCTTAGAGGGTCAGCTCAGAGTCACAGGCCTTCTCTTGCTGTTTCCGTT
TATACCCAGATGGAAAAACGTTCCATACTTCCGGATAGTTATACTTTTCCGTTTCTACTC
AAAGCATGTACCAAGCTTTCTTGGCTTGTTTCTGGCCTTACCGTACATGGGAAAATTGTG
AAACATGGGTTTGAATCTAATAAATTTGCGAGGAATACCCTTATATATTTTCACGCTAAT
GTTGGAGATATAAGAATTGCAGGCCAACTTTTTGATGGTTCTGCTAAGAGGGACGTTGTT
GCTTGGTCTGCTTTGACTGCTGGATATGCGAGGAGAGGGGAATTGGATGCGGCAAGGAGG
CTTTTTGATGATATGCCGGTTAAAGACTTGGTTTCTTGGAATGTAATGATCACTGGGTAT
GTGAAGCAAGGGAAGATGGAGAATGCGAGGGAGATGTTTGATATTGTGCCAAAGAGGGAT
GTTGTGACTTGGAATGCCATGATTTCTGGATATGTGCTTTGTGGAGAAAATGAGAAGGCT
TTGAAAATGTACGAAGAGATGAGAGGTGCAGGGGAATACCCTGATGAAGTCACTATGTTG
CACCTTTTATCCGCTTGCACGGATTCAGCATTCTTGGATGTTGGCGAGCAGATACATCGA
TCAATTATTGAGATGGGTGCAGGCGAGTTAAGCGTATTTCTTGGTAATGCACTTGTAGAC
ATGTATGCTAGGTGTGGCAGCATTAGTAAGGCACTTGAAGTGTTTCAAGGCATGAGAGAG
AAGGACGTGTCGTCTTGGAACATAATTATATTAGGATTAGCTTTCCATGGTCATTCTGAA
GAATGTATCTCTCTTTTTGAAGATATGAGGAGAATGAAGTATATCCCTAATGAAATTACT
TTTGTTGGTGTATTGGTTGCTTGTAGTCACGCTGGTAAAGTTGATTATGGCCAAGAATAT
TTCAACATGATGAGAACTGACTACAATATTGAGACAAACATAAGGCACTATGGTTGTATG
GTGGATATGCTAGCACGTGCAGGACTATTGAATGAAGCGTTTGAATTCATAAACACGATG
GAGATTAAACCTAATGCTATTATATGGAGAACACTGCTAGGAGCTTGTAAAGTTCATTCC
AATGTCGAGCTGGGAAGGTATGCTAATGAGCAGTTGCTTAAATTGGGAAGGGAAGACAGT
GGGGACTATGTCTTACTGTCTAATATCTATGCGTCAAGGGATGAATGGGATGGTGTTGAA
AGGGTGAGGAAGTTGATGGATGACAATGGGGTTTGGAAAGAACCTGGTTGTACTTTAATT
GAGGCTGATGATTATGATCTCAAGAATTTTTGTTTTGATTCCAAGCGTAAACACTCTTGA
