Microarray Probes on PGSC0003DMT400093397
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1297_PI426222305 |
JHI_St_60k_v1 |
ATTCGCAAGTTCTTCAGATTGCCAAATGGAAGATCAGCCACCTTCTGGTATGGACTTACC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400093397
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400093397 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g087040.1 |
+1 |
0.0 |
610 |
380/393 (97%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch02 gene_region:44158457-44159629 transcript_region:SL2.50ch02:44158457..44159629- go_terms:GO:0008270 functional_description:RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type |
| TAIR PP10 |
AT5G40250.1 |
+1 |
4e-105 |
318 |
193/320 (60%) |
RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376 |
Transcript Sequence (1179 bp)
>PGSC0003DMT400093397 1179 pgsc_dm_v3.4
ATGATTTGTTCATTTGGTGAAGTTGAGTCACAAAGATGGGTTTCTAGACATACCCATTTG
AAAAGTTCTTGGATTCAACATAGAAAAGATGGTGTTTTTACATATCCTCCACCTCTGTTT
CCCCCATCTCCTCCTTCATTTGGTGGAAGTTCTAGTTTTCATAAGGAACCAAACTCATCT
TCTTCATCCCCATCTGGAAACAAGATTAGTCCAGCTGTTCTTTTCATTATAGTTATATTA
GCTGTCCTGTTTTTCATATCTGGTCTGCTCCATTTGCTAGTTAGGTTTCTTATCAAACAC
CCTTCTTCTTCAGCATCATCTCAGTCTAATGGATATCCTGAAGTTTCTAGTTCAGATGCT
TTGCAAAGACAGTTACAACAGTTATTCCATTTACATGATTCTGGTTTGGATCAAGCATTT
ATTGATGCATTGCCTGTCTTTTTGTACAAAGAGGTTGTTGGTCCTAAAGAGCCCTTTGAT
TGTGCTGTTTGCTTGTGTGAATTCTCTGATAAGGATAAATTGAGATTGCTCCCTACTTGT
AGCCATGCTTTCCATATCAACTGCATTGATACTTGGCTCCTCTCGAACTCAACGTGCCCT
CTTTGTCGAGCAACTCTTTTCAATCCCGGGTTTCCCATTGAAAATCCAATTTTCGATTAC
GTTGAGCCAAGAGATGATGATGGTTATCATGGTAATGGGGATCATGAGTACCCCACTTCT
CAAAAGACTATGGAACTAGAGGAAGTTGTGGTTGCTAAAGCAACATTTCCCGTGAGACTT
GGTAAGTTTCGAAGATTGAATGATGGGGGAGAGGGAGAGGAAGTAGAAGGAGTAGGAGAG
AGCAGTAGTAGTAATTTGGACGCAAGAAGGTGCTTTTCAATGGGTTCATATCAGTATGTG
GTTGGTGATGGTAATCTTAAGGTAGCCTTGGACAATGAGCGAAAGACGAATAATATGAAT
CAAGCCAATTTGGCAGAGCACAGTCCTAATCCGTCAATTGATGAAGAGAATGAGGGGAAA
AAGATAGGTATCGGCACAAAAACAGATAGTTATTCTGTTTCCAAAATTTGGCTTTGGTCG
AAAAGAGGCAAATTCGCAAGTTCTTCAGATTGCCAAATGGAAGATCAGCCACCTTCTGGT
ATGGACTTACCGTGGCTTAGAAGAACAGAAGGCATGTAG
