Microarray Probes on PGSC0003DMT400090858
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_47062_PI426222305 |
JHI_St_60k_v1 |
ACCTCATCTGGCTTGATCACTCCAGTTTTTATAGAGGATCAATTCATTAATGTATGGTAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400090858
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400090858 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G10560.1 |
+1 |
5e-75 |
251 |
135/288 (47%) |
plant U-box 18 | chr1:3484613-3486706 FORWARD LENGTH=697 |
Transcript Sequence (1368 bp)
>PGSC0003DMT400090858 1368 pgsc_dm_v3.4
ATGATCAACAAATCTAACGAATTCATTCGCCGGATTTTGAATTTTCCGGCTATTCGTCCT
GGTGAAACAGTGTGTTTTTCTAGCCTTGTTTCATCTTTGATCCAATTAGGCCAAACAATA
TGTGAATACAAGTCAAGAACTTTTTATACAAATAAGAAGAATGTTAGGAATTCGATTCGT
TTAATTGAGGATATTCTCATTGTTCTTAAAGAAATCCCAAATGGGGTTTCAAGATTTGCT
AATTCAAGTATTGTGAGCTTATCTGAGATTCATTTTATCTTCCACAAGTTTCATTTCTTG
TTAGATGATTGTAGCAGAGAAGATTCAAGAATATGGATTTTAGCGAAATCCGAGGATGTC
TCTTGCCAGTTTCAGATGCTGGCAAGAGCTGTTGCTGTGGCACTTGATGCTCTTCCCTTG
AAGGAAATGGATGTTTCTGTGGACGGTCAAGAAGTGGTTGAGTTTGTGAAGAATCAAGCT
GTTAAGTTGAAGTTTGAAGTGGAAATGGATGATGGATTACGTTTGCTCACTAAAACAAGC
ATTTTTAACAGGTCTTGTTTGGTGGAAGCTGGTGTAATCCCACCTCTTCTGAATCTTGTT
ACTTCAAGGGATTCTTCTTGTCAAGAGAATTCAATGGCTACTCTGCTGAACCTCTCAAAG
AACTCTAAATGCAAAAGCACAATTGTTGGAAATGGAGGTTTGTTCTTGATACTTGATGTG
TTGAAAGGAGGGCTAAAGATGGAAGCTCGACAGCACGCAGCTGGTACATTATTCTACCTT
ACATCAGTAGAAGAGTACCGTAAAATGATGGGAGAAAATCCAGAGTTCATTCCATCACTT
TTGGAGTTGCTAAGAAATGGCACTGACAGAGGAAAAAAGAATGCCTTGGTCACCATTTTT
GGCCTCCTAATGCGCCCCGAAAACCACTGGAGAGTGATTGCTGCTGGATTAGTCCCCTTG
GTGGTTAATCTGTTGAAATCTTTCGAAAGGGAAGATCTCATTACAGATTCTTTAGCAGTT
TTAACAACGCTTTCTGAAAGGCTAGACGGAGCAATGGCTGTTCTTTATGCTGGAGCTTTG
CCTATTATTGTCAATGTTCTAAGTTCTTGCAATTCAAGGGCATCAAAAGAGTACTGTGTC
TCATTGTTGCTGGCTTTGTGTATCAATGGTGGAGCAGATGCAGTTCCTGTTTTAGTAAAG
AACTCATCTCTCATGGGACCGTTATATTCCCTCCTGGCTGAAGGCAACTCAAAAGCAAGC
AAGAAAGCTAGTACACTCATCAGAATCTTGCACGAGTACAACGAGAAGACCTCATCTGGC
TTGATCACTCCAGTTTTTATAGAGGATCAATTCATTAATGTATGGTAA
