Microarray Probes on PGSC0003DMT400090346
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_1363_PI426222305 |
JHI_St_60k_v1 |
GGTGGTACATCAGAAAAAGTTGTTGGACAAATAATTGAAATGCTCAAGCTCAAAGTTTGA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400090346
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400090346 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc02g088500.1 |
+1 |
2e-98 |
306 |
196/447 (44%) |
evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch02 gene_region:45151406-45152794 transcript_region:SL2.50ch02:45151406..45152794- go_terms:GO:0080043 functional_description:C-glucosyltransferase (AHRD V1 **** C3W7B0_ORYSJ); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase |
| TAIR PP10 |
AT3G16520.3 |
+1 |
6e-44 |
161 |
115/389 (30%) |
UDP-glucosyl transferase 88A1 | chr3:5619355-5620833 REVERSE LENGTH=462 |
Transcript Sequence (1326 bp)
>PGSC0003DMT400090346 1326 pgsc_dm_v3.4
ATGGGACATTTGATGCCATTCCTTCGCCTTGCTGCCATGTTAGCTTCTCGTAATTGTAAG
GTCACTTTACTTCCTGCCCAGCCTACTGTCTCTGCCGCTGAATCTAACCATTTGAATAGC
TTCTTTTCTGCGCATCCACACATTCAACGCCTTGATTTTCATGTCGTTCCCCTCCACACG
TCCAATCCTCACGGTGATCCCTTCTTTCTCCAGTTTGAAGCTATCATTCGCTCTGTTCAT
CTTCTTCCTCCTCTTCTATCTTCTTTATCTCCACCCATCTCCGCTCTTTTTCTTGACATT
GCTGCTGCAACGTGCGTTGATCAGCTTGCTGATCATCCATCATTGTCTATATCCTACTAC
ATCTTAAGTACAACTTCTGCTAGATTTTTTTCTCTTCTTTCCCACCTACCTCACTTGACT
CTTGAAAGCAGTTGCGAAAACTTGAAGCTTCATGGTTTGCCCTCATTTTCAATATCGAAC
ATCCCTCCTCCTTTGTTCAATCCACAGAATCTCTTCACAACTCAGTTGATCTCAAACGCA
CGCGCTATCTCCAGAGTTAAAGGTGTTGTTTCCAACACGTTCCATTGGTTTGAGGCGGAG
ACAATTGAAGCCCTCAACAGTGGCAAGACCTCTATTACTCTTCCTCAGTTTCTGCCAATT
GGACCTTTCAAGCCCTACGAAGACCCTGGAAAATGCGCTTCCCTTTCTTGGTTAGATGGA
CAACCTGCCAAATCAGTTGTATATGTTAGCTTCGGAAGTAGAACAACTATGTCAAAGGAC
CAAATAAAAGAAATTGGAGAAGGATTGTTAAAGAGCAAGCAAAAGTTCCTTTGGGTATTA
AAGTCCGTCATAGTTGATAAAGTAGAGGAAACAGAGCTACAAGAATTGGTAGGACGTTCA
CTCCTCGAAAAAATAGAAGAGAAGAAACAGGGGATAGTAGTTAAAGAATGGGTGAAACAG
GAAGAAATTTTAACACATCATGCAATAGGAGGATTCTTTAGCCACTGTGGTTGGAATTCA
GCTATGGAAGCAGCTCAGAGAGGAGTACCCATGCTTGCTTGGACACTTAACGGGGACCAA
AGGTTTAATGCAGAGGTGGTGGAGAAAGCAGGGTTGGGGTTGTGGCCAAAACATTGGGGT
TGGCTGGGCGAGAGATTGGTGAAGTCGGAAGAGATCGAAGAGAAGATTGAAGAGCTAATG
CAAGATCACAAGTTCAGGTCCATGGCTCAGAAGGTGGGCGAAGAGGCCAAACGGGCTTGG
GAAATTGGTGGTACATCAGAAAAAGTTGTTGGACAAATAATTGAAATGCTCAAGCTCAAA
GTTTGA
