Microarray Probes on PGSC0003DMT400089070
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_61_PI426222305 |
JHI_St_60k_v1 |
GATGCAATCAAGGAATTGAATATACAGGGCTGTCCAAAATCAATGAGAGTTGTAATTTAC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400089070
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400089070 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc01g057010.1 |
+1 |
1e-93 |
289 |
163/379 (43%) |
evidence_code:10F0H1E0IEG genomic_reference:SL2.50ch01 gene_region:50833554-50834726 transcript_region:SL2.50ch01:50833554..50834726+ functional_description:F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 |
| TAIR PP10 |
AT4G12560.1 |
+1 |
2e-28 |
114 |
104/379 (27%) |
F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413 |
Transcript Sequence (1125 bp)
>PGSC0003DMT400089070 1125 pgsc_dm_v3.4
ATGAAGAAATATCCTGAAGATATGCTCATTCATATCCTTTTGAGACTTCCACTGAAATTT
ATCTTGCGATTCAAAAGTGTCTCCAAAACTCTTTACACTCTCATACAATCTTCATCTTTC
ATCAATATTCATTACAACCACACATTAAATTCGACATATGATAACATTCTCCTAAAGCGC
TCCTTCAAAGAAGACATTGAAAGATATAAAGCTGTTTTTTCTTTTATTCCTAATGACGAT
GAAGATAATTTAAATACCGTTTATCCAGATCTAGATGTTCCTTATACGTCAAGTATTTCT
AGTGTTAAAAGTGATAAGCTCATCAATTCTAGCCATGGTTTAATTGCTTTGATGGAACCA
CGAACCACCATCGTGTTCAATACATCAACTAGAAATTATAAACGACTCCCTCCTAGCCAT
TTTCAAATTTCGAAGGGAGAATATCAATCGTTTGAAAGTGGTGGATTTGGTTACGATTCA
GTTGTTAATGATTTCAAGGTTTTTAGAATATCTGAAGTTTTCAAGGAAGATGGTTTCGGA
CACATTAACGATGGAGAGAAAAGGGTTGAGGTATATGAATTGGGTATTGATATTTGGAGA
AAATTGGATCATGTGGATCAACAATTGCCCAAATTATTTTGGTTGAATTCTTCAATGTCT
TATAAGGGTTGTTACCATTGGATTGCATCATTTGAAGGACAAAAAATCATTCTTTGCTTT
GACATGACAACCGAAATTTTCCGAAATATACAAATGCCAGCAGACACAAGCAAATTTACA
GAGGGCACACTTCATAGCCTCCTAATTTTGAATGAGTCTCTAAGTTTGTTATGTTACCCT
TCAGTTATTGATCCAAATACAGATTTTATGGAAATTTGGATTATGAAGGATTACAATATT
TATGAGTCTTGGATTAAGAAGTACACAATAATTGGTGTTCCTACTGAAAACCCATTAGTA
ATGTGGAAAGATTTTGTATTGCTTTTTCAAAGCAAAAGTGGATATTTGATGTCATATGAT
CTTAAACATGATGCAATCAAGGAATTGAATATACAGGGCTGTCCAAAATCAATGAGAGTT
GTAATTTACAAAGAATTCTTGACTCCCATTCAAAGAGAAAGCTAA
