Microarray Probes on PGSC0003DMT400084733
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_24989_PI426222305 |
JHI_St_60k_v1 |
TTCTCACCGTCTTAATCAGCTTCGTACTAGTTACTGGAATCATACAGCTCTGTCAAAGAG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400084733
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400084733 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G43270.2 |
+3 |
5e-54 |
197 |
137/321 (43%) |
squamosa promoter binding protein-like 2 | chr5:17360527-17362143 REVERSE LENGTH=419 |
Transcript Sequence (4179 bp)
>PGSC0003DMT400084733 4179 pgsc_dm_v3.4
CCAGCTCACACACTGTCGTTCTCTCACTGACAGAGTCACTCACCAGTCACCACTCTCTAC
TGTATCCCCTCTTTTTCTTTTTCTTCATTTGGTAAAGTGAAAACTCACAAAAACTTCTCT
TCTCAAACAAAAATTGGTGAGCTTTTTCTTCAATTCTATTGTATTTATGTATATCTTATT
TACCAAGTTAATCACTTTGCTTTTTTTCTTGAACAACAAGAATGGATAATATCACCATTT
TTTGTCTCAATCTGAGTTTTGGTTCTTGTTACTGTTTTCTCATCGATTCTTGGAGAAATT
GATTAAAGGAGTGGGGATTTCTTGATTTAGAATTAGTGGGTACAAGTAAGTGTAATTGTT
TTTACAAGAAGTGGGTTTTTTTTTCCACTTTTGGAGAAACAGACTGAGGGAATGGGTTCT
TGTTAGCTCAAATCTTCCATAAAATGGATTTTTTTTGTGTGTGTTTCGGACACCCTTTTC
TTGGTTTGTGCTACCTGCTCAGCTTACTTTATTTATTACTGTAATTTTTATCCATTTTTG
GTGAAACAGATTAAGGAAATATATAGTTATTTGCTCATAACTTGCATAATATGGAAAATC
TTTTTGGGTTTCAGACACCCTTTTTCTTTCTTTTTTTTCTGGGTTTAGAATTAAACTGAT
GTGAAAGAAACAAAATTGACCCAATTAGTTTGTAGTTTTGAAGTCTCTTCGATTGATGTT
TGGGAGTCTTTTGTTTGCTGTTAGTTTCTTAAGAGATGGGAGGTAAAGTTTGCAGCATTT
ACGATGCTGACTTCCTAAACGATGAGCTTCACTAGCATTTTCTTGGAAAAGAATTCATCC
GTTAGTTTAAGTATGGAAAAGTCTGTCTTCTTCTTTTGGTGTGGATTCCAATGAAACCCT
AAGATGGGGGACCAGAACTTTCCAAACAAGTACCAACTACCCCTCTCTCTACTCTTAAGA
AAAAAATGTGTTTTTATTTTTCTTTTCATAGATATATTAGCTGAAGAGATAATGGAAAAA
AAAACATACAAATTATGGAGTATTTCATATCTGTAAAAAGGGTGTCAGTAAATCTGTCAC
AATCAAGAAAACAGAATAATTAAACTTGCATAATTATTAGACTGAGTCGTCGGCAAGCAT
TTGTTTGTGCCATTTGTTTGTGGGGTTGATGAACCATTTAATGTTTGGTTATTTATTTGG
TTTCATTGATTAGGTGATGAAACAAGTAGCTGAAAATGATGTTGTGGAGTTAACAGATGG
GAGAAACATTTGTGGACTTGGACTGGAAGGGATTGAGCTCTGTTTCTGTATTTGAATAGT
TATCCTTGTCTACTTATAGTTTTCTCACCGTCTTAATCAGCTTCGTACTAGTTACTGGAA
TCATACAGCTCTGTCAAAGAGATTCAAGTCTTAATTACTGTTTTGCATTCCATGAGTCTG
GAAATTTGGTAAAGCCATCTCATAGTTTCTTTCCCAAGATGGAGTGGAATGTTAAGTGGG
ACTGGGGAAATCTCGTAATGTTTGGTTCAAAGGCCTCTGAAAGTCCAAAAGAACTACAAT
TAACAGATTGGGGAGTTGAAGAAGAGGGAGAACTTGATGGGGGATCTTTCAATTTGTCAA
GTGGCGGTAGTGGCACGGGTGGTTATGGTTCTGATGTGAAGTGTGGTTCTTCCATCAAAA
GCTCAATATCAGCTTCTACCGACTCTTCACCAAAGGAGGGCTTTAAAGCATCCAACTTTG
CTTTTGAGGCATTTAATACCTCTCCTGAGGATCCTAGTAAGAAATTGGAATCCTCCAAAG
CTGAGGTCTCTAGAAACTCACCACCCATGGAGGCTTCAGTAGGCTCTGTTGAACCAGTGA
TAGGTCTAAAACTTGGTAAGCGGACATGTGAAACCTTTGGTGGTGGAAGCAGTGCTAAGG
TTTCATCCTTCCCTCCGAACCCCACATCATCTGCTGCAACAAAGAAAGCAAAATCATCTA
GTCAGAATGCACCAATTCCTCACTGTCAGGTTGAAGGTTGCAACCTTGATCTTTCTTCAG
CTAAAGAATATTATCGGAAGCATAGAGTTTGTGACAGTCATTCCAAAAGCCCAAAGGTTA
TTGTAGCAGGTGTAGCACGCCGCTTTTGTCAACAGTGTAGCAGGTTCCATAGCGTGTCTG
AATTTGATGAAAAGAAGCGAAGCTGTCGTAGGAGGCTCTCTGATCACAATGCACGGCGCC
GCAAACCTCACCAGGAAACTATCCAGTTCAATTCAGCGAGGCTTTCTTCGTTGTTTTATG
ATAGCAGGCAACCCATGAATCTTGTGCTCAACCAAGCACAACTCATTCACTCCAGAGCTG
CTGCGAACTCTACCTGGGAGAGCACTCAAGACTCTAAGTTCAGTATCACAAGAGGGTTTA
CTCCAAAGCCTGAAAGAACTAGCAGCACAAATGGGAAGTCACTACTGGAGGGGATCCAGT
TTTCACGGGCTGTGGGTGCACAGAGTAATGCATCTAGCTTGCTCTTGCCCTCCAAGGGCA
CCACAGCCGAGGTTTTTAATCGAGGTTTGTTTCACTCTATTGTGAATGCAAAGCCGTTGT
TCATTGCAATCTTTGAATTTTGTGTGATGGTGCAAAGAAGATCTTCTCTACTGTTGCCTG
CCTCTATTTGTATCTTTTTTAAAAGCAGTTATATCAATTTAGTTGCTTACTGGATTAATC
AGTAGTTACAGACTCCCAAATGCAGCAGTTCTTATTAAAGTACATCTCCCTCCTAATTAG
TACTCATCCTTTTCTTTTGATAAGGCCAATTTGTAGTCAACAATAGCTGCATTGTATTTG
CATTATGGATTACAGAGTGTACGATCTTATCTAGAACCCAACAATAAATGTGCCATAGTC
TACTTGTGCCTTTTCTGCATCTGGCCCATGTGTGATGAAGATGGTAGCAAGCATTTTGGT
TGAGAACTCTACTTTTACATCTAGGAGACCTTTATTTTTGCTTGAACTACAGTTTTAGAT
GTTCTGTAACACTTATGAATTAGACTTTAAAGGCGTTTTCATCCAGGAGTCGATTATGAA
ATTTTGCAAGAGTGCTATCAATGAGACTTCGAAGTGGTTGAAGCAGAACTAGACTTGCTA
TACTAACTATGCATTGGGGGTTGGAGATCATGACTAAGTTTCTCTTCGTGTTTCATACTT
GAATAAATTGAAAGACTAAGCTGACAACATATGGTCCGGCCCATACCTAAACTGAAAGAC
TTTGTTAGATATGGAAGATACAAAAAGTATCATATCCAATATATAACTGATAGTAGCAGT
AGAATTGACTGATCTTCTTTAAAATGGAAGAAAAAAAAGGAGATTGAAAATTTGAAATGC
TGCTATGCGTGTCCTCTTGAATTTTGAAAAGTTGCTCTTTAATATGTTCACTACAAAGAA
TTGTAGAATGCTGAAAAGTAGGGAGGAACTTGAGTGGTAGGAAACTGATTGAAAGTGCAA
GATAGTAGAATTCCATCTCTAAGTATGTTAGTTTTTCTTTTCTCTATCAGGTGCCAAGGA
ATCCATGTTCAATATGGTTACAGGACCGGAATTTCCTCGTGCTCTCTCTCTTCTGTCAAC
TAATTCCTGGGGTTCATCCGAGCCTGAGACTGTTTCACTCAACCATGCAAATCAAACCAG
CATGCCCGAGCAGATGATGCAGGCAATTCCACAGGGTGTGCCGCATATGTCCAGTCAATA
CTGGCAGCAGGCTGGACAACATTCATCCGATACTCGTTACCATACATTGGCTGCTAATAG
TAACAGTGGCGGTAGCTTTCAGGAAATGGGAGTGTTCAAAGCTCCATTCGACACAGACTT
TTATCTCAATGCATTGAACTGAAGCCAACATCTGATGTGTTGGTGTATTTTCAGGATTTG
GCGACCTTTCCCATTTTGACATGTCAAAACTTGAAGGTCTCTGTTTAGTACTGGTATATA
ATATATAGGTTGGGCTTTTAAACTATTAAGAAAGTCTAATATTATGATGAATTATGCAGT
AAAATTTTGTTTGCCAGTGACATGAATTCCCAAGAATTGTAATTTCTTGATTCTGCAACT
TGGAACATAACTGCACAGGTTCCACCTATGAATGACTGTTTATCCTTTTTCATCATGTTC
AATTATTATATTATAACATTTACGTTATTATTAGTCTTC
