Microarray Probes on PGSC0003DMT400084231
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_57_PI426222305 |
JHI_St_60k_v1 |
ATGCGCTGCACGAAGTCTTTTAGTTGATGATGAATAAACACAAGTGTTCATTGAGGATTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400084231
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400084231 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc01g057000.2 |
+1 |
7e-104 |
305 |
149/164 (91%) |
genomic_reference:SL2.50ch01 gene_region:50798585-50800986 transcript_region:SL2.50ch01:50798585..50800986+ go_terms:GO:0006950 functional_description:Universal stress protein family protein (AHRD V1 ***- D7LAT3_ARALY); contains Interpro domain(s) IPR006016 UspA |
| TAIR PP10 |
AT3G58450.1 |
+1 |
8e-51 |
169 |
86/169 (51%) |
Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:21622032-21623057 FORWARD LENGTH=204 |
Transcript Sequence (918 bp)
>PGSC0003DMT400084231 918 pgsc_dm_v3.4
GTGGCAAGCTTTGGCATGTCGAAATGACACTTTGCTTCTTTTGGCATGCATATCTGCCAC
GTCAAACTTATTAGTTCTATATCAAATTCTCATCCCAAAACACAACAAAATTTGATTAGA
TTAGATTAGAAGGAGTAGCTTGAAAATAGTGAACAAAGGAGAAAGCAGGAAATATATATA
AAAAATAAAGAGCAAAGGAATACTGATCAAACGCCCGCGCCAACCAAGAGAGAATATATG
GAGGCAGAGACCAGTGCAGCTAATGCTCCAGCAAGTGCAGCTAGTGATACTCCGGTTACT
ATGAAAAAGATGATAATGGTGGCTATCGATGAGAGCGAGGAGAGTTTCTATGCTCTCAAA
TGGGCATTAGATAATTTGATCAACGATCCTTCTATTATCATCACTTTGATCAATGTCCAA
CTTCCTTTTACCCCCATGGTTTATCCTGCTGGACCTGTTGTGTTTGCGGCGCCTACTGTT
GTTGAAGCTGTGAAAAAAGGACAACACGAGAATGCAACTAGAATACTGTCTCGGGCACTC
CATCTCTGCAAACAAAAGATGGTGAAGGCGGAGACTCTGATCCTAGATGGGGACCCAAAA
GATATGATATGTCAAGCTGCACATGAACTGCACGCTGACCTTCTAGTAGTCGGTAGCCGA
GGGCTCGGCAAGATTAAAAGGGCTTTCTTGGGTAGTGTGAGCGACTATTGTGCTCATCAT
GTGCAATGCCCTATTCTCATTGTGAAGCCATCCAAGGAAATCCCCAAAAGCAGCTAAGTA
GGATATATGATGCGCTGCACGAAGTCTTTTAGTTGATGATGAATAAACACAAGTGTTCAT
TGAGGATTATATAATAACTTATATATGTAAATATGAAGGAGCTTTATTAACTATCAATAA
ATTGAGGTTATATATATG
