Microarray Probes on PGSC0003DMT400083728
Probe ID | Chip | Probe Sequence |
---|
CUST_24064_PI426222305 |
JHI_St_60k_v1 |
GATCACCTCGAGGTATAATACATCGATAACGGATACTAGATGGTTGTCTAAAATGTTAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400083728
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400083728 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT4G10490.1 |
+3 |
1e-32 |
89 |
36/63 (57%) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6483900-6485179 FORWARD LENGTH=348 |
Transcript Sequence (1747 bp)
>PGSC0003DMT400083728 1747 pgsc_dm_v3.4
ATAAGTGTATATATACATGTCAAGGCCATTGCCATTATTCCTCAACACACATTCAAAAAA
TAAGGTTGCTAGCTACTTATAACATTATGAGAAGCGTGAAATTAGTATCTGAGTTGCCCA
ATTTAAAAGCAGTACCTTGTAATTACTATGTTGATAATCATCATAAATATTCATCACCAG
CCATTATTGACACTAATCATGATGATTCATTAATCCCCATCATTGATTTTTCCCTCCTTT
CCTCAAAAGACCCTCATCAACACTCCAAAGTCATTCAACAACTTGGAAGAGCTTGTCAAC
AATGGGGATTTTTCATGGTTGTGAACCATGGAATAGAAGAAAGTTTGATGAAGGAGTTGA
TTGGGGTGATAAAAGAATTCTTCTTAATGGGAGAGGAGGACAAATGGAGGTACAAAGGGG
AAAAAATGTTTGATCCAATAAAGTATGGAACTAGCTTTAATTATACTTCTAAGGACATCA
CTACTTATTGGAGAGATTACCTTAAACTCTCTCTTCATCCTCAACTTCATTGCCCCGACC
AACCCAATAATTTCAGGTATTTTCTGTCTCTCAATTTGTGTGCTTTTTAACTAATATTTT
AAACTATATAACTTTTTATGATATTAATATGAGATAAATTGCAACTTATTAGTATCTTTT
TCGTATAGTCTTTTGTCAATTTAAATTTGTGAAAGACAATAACAACCGGAAGAATCTTCC
TATGAACTTTGAAAAATCCACATTTTGATATGTGACATGAAACAATCAATGGGTCACTCT
TGTCGGAGTTGGGCCTGTGCGATTGCGACAATTTTATTGGTTCCGAAATCTTCATTAAGC
TAGCTGCTCTTTCAAAAATATTTATATTGGACATATCATAACTTTATATTTTATGTTGTA
TGGTTTAATTTAACAGAGAAGTTTTAGGTGAGTATGGTGAAAAATCGAGAAAAGTGGCAA
GAAAGTTACTATCAGGAATATCAGAAAGCTTAGGATTGGAAGAAGAGTTGATGAACAAAT
CCCTGAATCTGGACTCGGGTTACGAGGTGTTTGTTGCAAATTATTATCCAGCTTGTCCAC
AGCCCGAACTTGTAATGGGCCTTCCACCCCATTCAGATTTTGGCCTTTTAACTTTTCTAA
TACAAAATGATGTTGGAGGATTACAAATACAACACAATGGAAAATGGATCAATATCAATC
CCATTCCCAACTCTATTTTGGTTAACACTGGCGATCACCTCGAGGTATAATACATCGATA
ACGGATACTAGATGGTTGTCTAAAATGTTAATATTTACTATGTGCAATATGATACATCTT
CTTCTTTCTTTTTTTGGGACAGATATTTACGAATGGGAAGTACAAGAGTGTTTTGCACAG
AGCGGTAGTGAACAAAATGGAAAGGATATCAATAGGAATTGCAAATTGCCCAGCTATGAA
TGCCACAGTGAGTCCAGCTGCTTCACCTCTAATCCAAAATGAAAGGTTTCCACCACTCTA
TCTACCCAAGAAATACAGTGAATATGTGGAGATACAGCAGACAAATCCACTTGATGGAAA
GTCATGTTTGGACAGAATCAAGATTAATTCACTACCATTGAAGTAAAAAGAAAAAAAAAA
AAAAGGACTTTATTTCATTTTGTTTCAGTCGACTTGTCTCAAGAAATATGTACTCTCTTT
TTAAATGTATTCATAATTAAATACCAATTTAGCAATAAAAATAAAAAAAAATAAAAAACG
ATTGAGG