Microarray Probes on PGSC0003DMT400083090
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_28816_PI426222305 |
JHI_St_60k_v1 |
GAATTTTCTAGAGTTAGAGGTTGGGATCAGTATCACAGTCCTAGAAACCTTCTCCTAGCT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400083090
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400083090 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G25400.1 |
+2 |
5e-38 |
131 |
74/107 (69%) |
CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | chr3:9213236-9214144 FORWARD LENGTH=141 |
Transcript Sequence (608 bp)
>PGSC0003DMT400083090 608 pgsc_dm_v3.4
AAGAAATATAATGGAGAATAATAATAATAATAATTCTCATGATCAATATGGTAGAAAAGT
GATGAAGGATGTCTCTCTTCAGGAGCTTAGAGAGAGGCTTGTTGAATTTTCTAGAGTTAG
AGGTTGGGATCAGTATCACAGTCCTAGAAACCTTCTCCTAGCTTTGGTTGGAGAAGTGGG
AGAGCTATCAGAGATATTTCAGTGGAAGGGTGAAGTTGCAAGGGGTTTACCTAACTGGAC
ATCAGATGATAAGGAACATTTGGAAGAAGAACTTTCTGATGTTTTACTCTATTTGGTTCA
GCTAGCTGATGTTTGTGGACTTGATTTAGGTCAAGCAGCACTTACTAAGATTGTCAAAAA
TGCTCAAAAATACCCTGTTACTAAACCTACTTAATTATCACAAATTAAGCTAGCTAGTGC
TATCTTCTTGTCAGGGTGTGTCCTTTTTTTGAACTTTTAAGTTATATATGTTTAAGCAGT
TAATTATGTAAGAAATATTTTATACCATTAGCCATTAGGTCCCCCTAAAATATAGCTACA
TGTATGTCTGATATAGAAAGTAAGACATGTTATCTATGGTAATGTATGAGAGTTTTGTGG
TAGCCATC
