Microarray Probes on PGSC0003DMT400082143
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_52549_PI426222305 |
JHI_St_60k_v1 |
CATCAAGCGAATTGTATTTAGGATTCTCTTTCGGCAATTTAAAGCCATACACACCTTGTA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400082143
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400082143 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G20340.1 |
+1 |
1e-07 |
49 |
29/61 (48%) |
Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. | chr3:7093075-7093422 REVERSE LENGTH=115 |
Transcript Sequence (666 bp)
>PGSC0003DMT400082143 666 pgsc_dm_v3.4
GAACTTGCTAATTAGCTACTAAAATTCATATCTTCTTCTATGGGAAATTGTATTAGAAAA
GAATCCTTTCCCTCTCCTTTACTAAAGGCGAAAACCGTGAATTTGGAGGATGAACTTCTT
CTCATGGAAGAAAATAAGGATTGTATTTATTCTTCTGCGAGCTTAACAAAAGAGGTAAAG
ATAAAGATCACGAAGAAACAATTGTTTGAGTTAATGGGTAAAGCAGATGTTCAAGGCCTA
TCCGTACATCAACTACTGAAGCAGTTGATGAACGTTACGGAAGGCCTTGAGTTGCGTCAG
CGCTCATGGAGGCCTGCCTTACAGAGTATACCTGAGGTCAATTAGGTGTCCTCTTATTTT
TTACGAGGGTTTATTAGTATGTTTATATGTTATTCAGACTTTTATTGGGTGTGTCAGATC
CTCCAAAAGTAGGAGTGGGTGTGTCTCTAATCCTCCAAAAGTAGGAGTGGGTGTCTTTGA
TCCTCCAAAAATAGGAGGATCCGATCGATAAGACTAACAACATTTTTGAAAAGGTCTAGC
AAGCAACAACATATAGATATTGTGTATATAAGAGTTTAATATACATCCATCAAGCGAATT
GTATTTAGGATTCTCTTTCGGCAATTTAAAGCCATACACACCTTGTATATAAAGTTTAAT
TTTGAA
