Microarray Probes on PGSC0003DMT400081888
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_27958_PI426222305 |
JHI_St_60k_v1 |
GGCACATAATATGCCATGGGATAATGCAGTTAAGGCTGTTTCAAATAATTCTAAGGCAAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400081888
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400081888 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G20600.1 |
+1 |
8e-23 |
75 |
42/117 (36%) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:7194877-7195536 FORWARD LENGTH=219 |
Transcript Sequence (841 bp)
>PGSC0003DMT400081888 841 pgsc_dm_v3.4
TATACCTTTAAAAAACCCACAAAAACTTCTCAAGAACATTGTTCTACCACTTCTCTCTAC
TCTCATTTCCCATCTCTTCTATCATCTCTTCTGATAGCTTCAAATTTTGAATTTGTCTCT
CTGACTTCCCAACATGTCGGACATGTTGGATTCACGTGCTTGTAGTTGTGTCAAATTGAT
AGTGAGTTTAGGCGTCACAGCTCTGGTCCTATGGTTAATTCTACGTACCACGAAGCCCAA
ATGTTCCATTGGAGATGTTTATGTGCAAGGCCTTGACAAATCAATCAACTCCAACAACAA
CATGACAAAGCGTGACAACCATATATCATTTTTCAACTCAATTTGAAGAATGAAATGAAG
GACAAAGCTGTTCGTTACGACAACATTACCCTTAGTTTTTACTATGGTACAAATACAAGT
TACCCTCTAGGTAATTATACATTTGATAAATTTAAACAAGGTAAAGATAAAGAAGCATCT
AAAAGTGGCATGATTGAGGCACATAATATGCCATGGGATAATGCAGTTAAGGCTGTTTCA
AATAATTCTAAGGCAATTATTAGAGTTGATGTGAGTACTAAAATTAGGTACAAAATTATA
TTTTGGTATACTAAAAGACATCATTATTTTGTGGAAAATAAAGTTGAAATTGATGATAGT
GGTAAATCTAGTGCACAACAAATTAGTTGTTGTTTTGGGATTTTTGGATTTTTATTATTT
GTAATTTTGTCACTTTTACTTTAATTGGTTTAGGGTCCATGAAAAAGGTGAAGCATCTTT
TAATTAATTAATTCAGTGCACTTTTTGTTATTCTTTCTTTCCAGGCTGTAAAGGACTTGC
A
