Microarray Probes on PGSC0003DMT400081473
Probe ID | Chip | Probe Sequence |
---|
CUST_39961_PI426222305 |
JHI_St_60k_v1 |
GCTTATGCTAATCATTTTCTTGAAGGATCGTTTGGTAGAGTGCATTAGAAAAGATAATGC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400081473
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400081473 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT5G12900.1 |
+3 |
2e-149 |
449 |
240/396 (61%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562 |
Transcript Sequence (2015 bp)
>PGSC0003DMT400081473 2015 pgsc_dm_v3.4
CTACCATATTTCAGTCCAGTCATTTCTTTGGTCCAAATGGAGTATCGCCTCATATTTTCT
GATACTCATTCCTGTGTTATCTGTTTATATTTATGAAAGTAACCAACACGGATTGTCGTG
GGATGGATCGGATCGGATCCCACCATGCTATTTGAGGTTGAGCTTTGGGTGTGAAAATAA
TCCTGTTAGGGAGCGGTAAATAGGTCTTATTTGGCGTGAATACAAATTAATTGCTCAGAT
GGATATGCTTTTTGTTCAATTTTTAATGGGAAGCCATCCTTAATTTCTGTATTTTAGGTT
ATCCTGATTCACCAAGTTTGAAATGTATGCAGAGTTATGAAGATGCTCCATTACCTGGAT
CCAAACAACTACACCTCGACGATCGAGACTACACTGACCTTTGGGATGATTATGGCCTTG
GTGGAGTAGCAAATTGTGATGAAGTCAGTCTATCGAATTACAGAAAGGCGAATTCCTCCT
TAAGGAAAGGAGTTTCATCCAATTTGATCAATTCTGATTCTCATAACTGTCCAACTGATG
ATCAGAGATCGGTCACCGGCTCTTATACTGGTCATATCACTCTGCTTAGAAACTCTCCTG
GTGGTGATTACTCTAACTCTAGAAGAAGCTCTTTGGGTGACTTGAGATCGCTTTCGTCTT
ACAATAGATCATGTAAACCTGCTATGGTAAATACTGAGACAGATGGTGCTAGCAAAAGTG
GGAAAAGCTCTAATGTAATCGTGCCATTGACAAATTCGCACTCTTTAAATCAATTGCAGC
CAAAGAGTAAAGGAATGAACTTGTCGTGGTTGTTCCCTAAGCTAAAGAAGAAAAACAAGA
ATGAAAATTCACCATATCGGAGAGAGGCCGAGGAAGTTTCTCAGATTTGTAAGGATCACA
TCGGGGTGGTTTCTGTTGAAACGTTGAGGAAAGAACTCGTGGAAGCAAATGAGAGCAGAG
AGGCAGCCTTGATGGAAGTCGCGGAAATGAAGTCTTCTTTAGGAGGGCTAAAGCAAAAAA
TGGAGTACTTAGAAACTTATTGTGAGGAGCTCAAGAAAGCCTTGAGACAAGCAATTCAAA
CAAAAGAATCCCAACTATCCAACATGCTTATAGATCTTCCGAGAAGGGGGAAATCAACGG
ATGGGGATGGAGAAAACACGATTCCTGTTAGTGAAGAGGTAATGGTTGAAGGATTCTTGC
AGATAGTATCGGAATCAAGACTATCCGTTAAGCAATTCTGCAAGACTCTTATTGCACAAG
TTGAAGAGACAGATAATTCCTTAACCGATAGCTTAAACCTTCTACTTCAACCTTACAAGC
TTTCCCTTAACTCGAAGCACTCAAAGGCGATCCTATACCATATTGAAGCCATCATAAACC
AGTCACTCTTCCAAGATTTCGAGAATGTTGTGTTCCAAAAGAACGGTGCTCCAAAACAAT
TAGACTCTCAACAAGATTGCCATGATCAATTCTCATCGTTTGTCTCGTTGAGGAACCTAA
GCTGGAATGAAGTGTTACGAAAGGGGACTAAGTACTATAGTGAAGATTTCAGTAAATTTT
GTGATCAGAAAATGTGTTGCATCATCACATCACTTAATTGGAGAAGGCCATGGCCAGAAC
AACTCCTACAAGCATTCTTTGTGGCTTCTAAGTGCATTTGGTTGTTGCATTTACTCGCGT
TTTCGTTCGATCCTCCACTTGGGATTCTGAGAGTTGAAGAGAATACAACATTTGATAAGA
ATTACATGGAGGACATATTTGGAGATAGGCAAAAATCACAAGGTACAAGTAAGGTTAAGA
TTATGGTAGTGCCTGGTTTCTATGTACGTGATAGAGTACATAGGTGTAAGGTAATTTGCA
GGTACAAATCTGCAGCTTAATTGCTAATATAGTTAGGATATCCTTCTCAATTTTTTTTAT
CTAACATGTAATGTTGATCAGCTTATGCTAATCATTTTCTTGAAGGATCGTTTGGTAGAG
TGCATTAGAAAAGATAATGCAAGATTATCTTTGTG