Microarray Probes on PGSC0003DMT400079538
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_41322_PI426222305 |
JHI_St_60k_v1 |
GCAACTCTTTAGCTTGCTTTTTAGGCCTAGGTTATCTACTTGAATTTGGATGTAAATATC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400079538
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400079538 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT4G34630.1 |
+1 |
6e-10 |
58 |
28/53 (53%) |
unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:16537093-16537692 REVERSE LENGTH=199 |
Transcript Sequence (946 bp)
>PGSC0003DMT400079538 946 pgsc_dm_v3.4
GAAAAAACTCCTCCTCAAGTAAACTACTTCAATACAAACCCTTATCAATTTTCAAGAAAA
TCAGAAGCCAATATGTTGAGAATCCTTGGAAAAAATCTCAGAATTTCAAAATCAGCAACA
ATGGTTGTTAGATCTGAGTCAGAAATTGATGCCCATGATCTGTTTGATGAATTGTCTTCG
TGGGAATTTGTTAACCCTTCTGATGATGAACAAGAAGACAGCTACTCCTTCACTGATCAA
ACTGATGATGATGTTGAATTGATGTTAAAAGAAGATGACCCATGTGAAATTGAGTCTCCA
TCTTCTGATATCTCGATGAAATCGGAAGCAGAGTCGGGATCTCCGTCGCCAGTTCAAACA
ATTGATGCATTGGTGGTTTGCCCTGTTGGGTTCAATCATCATGATACTTTTCGTGATGAT
GATCAGGAGGAGGACGATGAAGAGGAAGAGGAAGAGGAAGAAGAAGATTATGACTATGAT
TTGGATGATGAGTTGGTGCCAAATTGGTTGAGTGATAAACTTGGGAGACAAAGGATTAGG
AAATTGGGGAAAAGGGCTTGTTCCAAGATGAACAAATCCAGAAAGGCGCCTTATGTTTTT
AATAGGCCTGGATGTGTTCATGGTAAACATGGATTTGGTATGCGGTAGTTATGTCTAAAG
TAAATAATTTGCATGTTCAATATGGATGAACAAAAAATGGGAAGTTAAGTTTTAGGTTAA
TTGATTAACTGGAAGCATTGTTGATTTTATCTGAATATAATCTTGATGTAATTAGGGCTG
GTGGAAATTAAGTTGCTATCTAATTTGCAACTCTTTAGCTTGCTTTTTAGGCCTAGGTTA
TCTACTTGAATTTGGATGTAAATATCTGAATTTATCTAATGCAATTTGAATTTCAAGATC
CAATCTTTCTCATTGATCATCTGTGGTTTACCTTGTTGTTGTTGTT
