Microarray Probes on PGSC0003DMT400078767
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_33627_PI426222305 |
JHI_St_60k_v1 |
GACTTGTTGTTCTTCATCTTTGGTCCTCTGACTGTCTATTTAGCCAATTGATAAGAAAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078767
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400078767 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G03341.1 |
+3 |
8e-38 |
128 |
55/71 (77%) |
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:790338-790556 REVERSE LENGTH=72 |
Transcript Sequence (580 bp)
>PGSC0003DMT400078767 580 pgsc_dm_v3.4
TTAATACCCCAAATCTTCTTCTTCAAATTTTGTATCAATGCTCCTTTTAGTAAAATTTGT
GTGTAACATTGCAAAAATCGCAGACTTGTTGTTCTTCATCTTTGGTCCTCTGACTGTCTA
TTTAGCCAATTGATAAGAAAAAAATGGGTTTCGTTGGAGTTCCGATCTGTGTGCAGTGTG
GCAATGCTAGCAATCCTTGTAGGTGCAAGGTGGTGGGGCCAACACTTGGTTTCTTGGCAT
TTGCTGCGGCAGCAATTGTAGAATGGCCGGTTGGTGCTCTGGTTTATGTGTTCCGTCACT
CCAAGGGACGCCGGATTATGGGTCATCCAGCAACCGTCATTTATCCTTCAGTCACCAACT
CTATTCCTATTTAATTTTCCTTTCAACAAAGATCAGGTGCTTTGTTTGTAGCGTGACAAT
AATAATATATAATGTATGATGCTTTAAATAAGCATTAGTTTTTTTTTGTGTACTTGTATC
AAGTTTGGTTGGGGTTAAATAAGCTTGATGTGGATTGAATTATACTACATCTATAAAAGA
GCAGTCAGTACAGCATAAATAAGTAACATGTAGAATGAAG
