Microarray Probes on PGSC0003DMT400078471
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11151_PI426222305 |
JHI_St_60k_v1 |
CGACTTGTTTCAGAGTAAAAGTGGATCGTTGATTGAAGAAGATCAAAGTCAATGGAAGAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078471
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400078471 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT1G71015.1 |
+1 |
2e-51 |
174 |
94/179 (53%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26789389-26790061 REVERSE LENGTH=195 |
Transcript Sequence (1203 bp)
>PGSC0003DMT400078471 1203 pgsc_dm_v3.4
TATAAAACGAAGAAAAACAAAGCGCAACCCTTCAAGTATCAAACAAGAAACACAAACAAA
ACAAAAAAAGCTGATATGGGGAATAGTCTAGGAAGAAAAAAAACAACAAAGGTAATGAAA
ATCGATGGACAAACGATGAAATTCAAAACCCCAGTTTATGCAAACGAGGTTCTGAAAAAT
TATCCATCGATGGTATTATTAGAATCAGAAGAAGTAAAGCATTTCGGGGTACGAGCAAAG
CCATTAGAGCCTCAACAAGAGTTAAAGTCTAAAAGGCTTTATTTTCTCGTTGAATTACCC
AAAATCCCCGAAGAGAAAAATAAAAACCCGAGGAGGGTCCGTTCAGGGATCCAAATGAGC
GCGAAGGATAGGCTTGAGACTTTAATGTTAGCAAGGAGATCCGCGTCTGACTTGACAATC
ATGAAGCCCGCTAGTGTTATGATGAGTGAAGAGTATTCGTCTAGCTTTGCTTCGGGCCCA
CTCAACGGTGTTGGGCCTCAGGCCCAACCCGTGAGGTTGAAGCTAAGGTTACCAAAAGCG
GAGGTGGAGAAATTGATGATGCAAAGTAAAGATGGGAGTGATGTCGGTGAGAAAATTATG
AAACTTTGCATGAATAGTAATAACGATGGTGTCCAGGCCGACTTGTTTCAGAGTAAAAGT
GGATCGTTGATTGAAGAAGATCAAAGTCAATGGAAGAAAAATAATGGAGGAATATTAATT
AAGAAGGGAATCAGATCTCGAGAGAAACGTGTAGGGTTCTTGCCAATTACAGAAGGGGAG
ATTCAATTAGCAATGACAGCTTCATAACAAAGAGAGCAAAAAAAAAAAAAAATCTATTTT
ATTATATTATATAGTTTTATGTACAAGTCATCTCCGAATTCACTCGCAGAATTTTTCAGC
TATTTATAATTAGTACTATATAGGTTAGGGGTTCGAGTCGTAAAAGCAGTTACTAATGTT
TGCATTATGATAACTAGGCTGTCTACATCACACGCGGCTCTTTCCCGAACTCTGCTAATT
AATGCAGGATGCTTTGTGCATCGACTATCCTTTTCTTTTTTTAATCAGGTTTTAGTCATT
TTCTGTAAAGTAAAAATTAAGAAGCTGAAAATTAGAGGTGAATTATGTGAGAAACTGGTT
ATGATATATTACATTTGTATCCAATTTTCCACTTTTTTTTATTTTATTTTTTGGTTGGTG
AAA
