Microarray Probes on PGSC0003DMT400078350
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_11079_PI426222305 |
JHI_St_60k_v1 |
TCTCATCAGCCATGTGCGTAGCGACAAACTTGATACACAAATTTTGACTTCTTTTATACT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078350
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400078350 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G01340.1 |
+1 |
2e-53 |
178 |
114/242 (47%) |
Encodes a protein whose expression is responsive to nematode infection. | chr2:164014-165068 FORWARD LENGTH=215 |
Transcript Sequence (1040 bp)
>PGSC0003DMT400078350 1040 pgsc_dm_v3.4
TTTTTGTTTTAAGTTCCAAAAAAAAAAAAAATCCAAAAAATGGGGAACAGTCTAGGAGGA
AAAAAAACAACAAAAGTGATGAAAATCGATGGACAAACGATGAAATTCAAAACCCCTGTT
TATGCAAACGAGGTTCTGAAAAATTATCCATCGATGGTATTATTAGAATCGGAAGAAGTA
AAGCATTACGGGGTTCGAGCAAAGCCACTAGAGCCTCAACAAGAGTTAAAGTCTAAAAGG
CTTTATTTTCTCGTTGAATTACCTAAATTCCCCGAAGAGAATAAAAAAAGTACGAGAAGG
GTCCGTTCCGCGATCCAAATGAGCGCTAAGGATCGTCTTGAGACACTTATGTTAGCGCGG
AGATCCGCGTCTGACTTGTCAATCATGAAACCAGCTAGTATTGTAACTGAAGAGTGTTCG
TCTTATCATAATAATAATAATAATAATAGCTCTGCTTCAGGTGTACTCAATAGTGGTGGG
CCGTCTCAGGCCCACCCTACGAGACTGAAGTTGAGGTTATCAAAAGCGGAGGTGGAGAAA
TTGATGATGGAGAGCAAAGATGAGAATGAGGTGGCTGAGAAAATTATGAAACTTTGCATG
AATAGCAACAATTGTGGAAGTGGTGCTTTGATGGAACAACAAAGTCATAATAATGGAGGA
ATAGTTAAGAAAGGAGTCAAATCACGAGAGAAACGAGTAGGATTTATGCCAATTACAGAA
GGAGAGATTCAAGTAGCAGTGGCTGCTTCTTAAACCAAAAAAATAGAAATTAGACGGAAA
AAAAAACATTCTATAGCAAGTAATAATAATATAGATAGTCGGTGTAAATAATTTTTATAT
AATATTCCTCTTTTTATTTTCTATGATGTAAGATTTGTTTAGGTACTATTATATATGTTC
CCTATTCGGATTTACTAGCTTATACGTGTTATATGTACCATCTTTTTATTTGTCATGTTC
TCATCAGCCATGTGCGTAGCGACAAACTTGATACACAAATTTTGACTTCTTTTATACTAA
ATATAGTTGCAAAACTTTTT
