Microarray Probes on PGSC0003DMT400078225
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_22745_PI426222305 |
JHI_St_60k_v1 |
TCGCACCTCTTCAATCCAGATTGTTGGCTATAAATTGTAAGCTACAAATAAATATGGTGT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400078225
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400078225 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT3G47070.1 |
+2 |
3e-07 |
48 |
34/66 (52%) |
LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17337205-17337507 REVERSE LENGTH=100 |
Transcript Sequence (864 bp)
>PGSC0003DMT400078225 864 pgsc_dm_v3.4
GCAGAAGTAGAAGGGATAATAAACTTGTGGAGAACTCGCGCTACATCATACGGCTCATAT
TCATCCTACTAGAAATCAGATCAACTATATTATCCACATTGGAAAAATCGATTATTGCTT
CTACACAGAACCAGAAAATTGGAAAAAGCCCTAATTTTGAAATTCAATGGCGTCGTTGAA
CTTGTTCGTCACTCCGATAGCAGCCGTAACCACACAACAACATCGAAGAAGAGTATACAC
GGCGGCTACGGCGTCGAAGAGTTCCGGCGGAAGCACTGAGGAGAAATCGCTTTTGGATTT
TATACTTGGTGCATTACAGAAGCGAGACCAGCTATTGGAGACAGATCCACTGCTGAATAA
GGTTGAGGATAAGAGTGTAAGCACCACCACTACAGGCCGGAAGAACTCTGTTGCTGTTCC
TCCTAAGAAGGATGGCGGCGGATTTGGCGGATTTGGTGGCCTTTTTAATAAGAAAGAATG
ATTCTACTCTGTGAGTCTGCTTAATTTTTTTTCACAAAAATTCTGCTTCCTTGTATGAAA
TTTATAATTTACTTCACTCTGTAATCTATTACTACTATTGAATTGAACAATTCATGAGCT
ACTTGCTTGCTCTGCAACATTGGTTATTTGGTGATGGTAGCTGCATTTGTATACTATAAC
ATACTTTTAATACACATTTCCTCCCAATAAACATCATATCTGTTGTTCTGAACATGTGAG
TTCGCACCTCTTCAATCCAGATTGTTGGCTATAAATTGTAAGCTACAAATAAATATGGTG
TCTGATGATATTTGTGGCTGATTTTTGAGTTTATTCAAGTTATTGAAATTTGAGGAATCG
CTACTATTAATGTATATCTATTTT
