Microarray Probes on PGSC0003DMT400076587
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_23856_PI426222305 |
JHI_St_60k_v1 |
TCGAATCCTTGGTTTTACTTCACCTGGTGTAGAGGTATCAGTGGATTGTGCAATAGTGAT |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400076587
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400076587 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT2G01080.1 |
+3 |
5e-64 |
208 |
119/165 (72%) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231 |
Transcript Sequence (1240 bp)
>PGSC0003DMT400076587 1240 pgsc_dm_v3.4
GAGAAAGAAGAACCAAAAACAATAATGGCAAGAATGCAAAGTCAAAAATTACCCCACTTT
GATGCCACCTTTTTTCAATTCCAAGCAAACACACACACACACTCACACTTTTTCCACACA
CAGTTGTCCCTTCCTCCCTCCATCTTCACTCTCTCCTAAAGCAAAGCAAAGTTGAAAAAG
GGATTAGAGAGAAAGCAAAGAAGAGAGTGGTGGGTCTTAATACAGTACAAATTATTCTTC
ATCCTATTCTAATTCTTCTTCATCTTCACCAACAAAACAGAATGACCTCAAGATTAACCC
AAAATGGTATCAATGGCACCCACCATCATCCTCAATATTACCCTCATCCCACTTCTTCTT
CATCATCTAAAGCTTCATTTAAAGGTTGTTGTTGTTGTCTATTTCTACTATTTTCCTTCT
TACTTCTCCTCATTCTCGCTGTCATACTTGTTATTGTACTTGCCGTTAAGCCTAAAAAAC
CCCAGTTCGATCTTCAACAAGTGGGTGTTCAATACGTTGGAATTACACCTAACCCAGCTA
CGATTGCCACTTCCTCCGCCTCTGTTTCACTCAATATTCGAATGGTTTTCACTGCTTTCA
ATGATAATAAGGTCGGGATCAAGTACGGTGAGTCCCGGTTCACGATCATGTACCGTGGGA
TTCCTCTGGGTCGGGGCTCCGTACCCGCGTTCTACCAACCAGCTCATAGTGTTAAGCGGG
TTGAAACTACCATCGTTGTGGATCGGGTTAACTTGCTCCAAGCTGACGCAGCGGATTTGA
TTCGTGACGCCGCCTTGAATGACCGGGTCGAGTTACGGGTATTGGGTGATGTCGGAGCTA
AGATTCGAATCCTTGGTTTTACTTCACCTGGTGTAGAGGTATCAGTGGATTGTGCAATAG
TGATCAGTCCAAGGAAACAGGCTCTCACATATAAGCAATGTGGATTTGATGGTCTAAGTG
TATGACACTGTTAACCCACAAGGAGCCACATTTGTTGGACTTGGTTAAACAAAGATAGAA
AAAAAGCAAATTGCAAAAGTAGCATTTGGAAATTTATTTTAGTAAAAGCAAGATTCTATT
GAGCCAACTAATTGTAGTGAAAAAAAAAGGCATTTAATTATTAACTGAATTTTCTTCTTT
ATATTTCTTTTTTGGAAAAAGTTTTGTTCCACGTTGTAAAGTTTTGGACAATATATTGTT
ATGCCACTCCTCAATGTCATTTGCTGGTATTATATTTTTA
