Microarray Probes on PGSC0003DMT400076400
Probe ID | Chip | Probe Sequence |
---|
CUST_15955_PI426222305 |
JHI_St_60k_v1 |
CAAATCAAGCAATGATGATGATTTCTTCTTAGAATTAGGGCCCGTTTGGATTGACTTAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400076400
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400076400 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT2G33810.1 |
+3 |
3e-19 |
86 |
50/98 (51%) |
squamosa promoter binding protein-like 3 | chr2:14305342-14305828 FORWARD LENGTH=131 |
Transcript Sequence (2184 bp)
>PGSC0003DMT400076400 2184 pgsc_dm_v3.4
GTACAAGACTCTCCTTGCTTGAAAAAGACTATCAAATAGGGGTTACTGAAGGCATTTGTC
AATTCATTTTGAGTAATGTAACTGTGCAAGATAATGATGTTTTTTTTTCCTTTTTGGTAA
CTAAGATAATGATGGGTTTAGTAGATGAATTTAGATATCTAGTGATAATGGAGCGCCAGT
GGAACAATTGAGCACTCAAGAAGTGCAACAAGCACTCTACTAGGCCGACATTGACAGCTG
AGAGACCAACTTGCAGTATCATAATAGTGCAAATTATTGCTTAGTTGGCTCCCTTCAGAA
TCTACTACATAAAGAACTACCGTAAACTATGTTAGATGGCTATTACGGGTATTAAACTCG
AAATTTTCAGAAAAAGAAGTAACTACAACCAATTACAATGCATACCCTTATCGCAAGGGC
AACAGAATAAACATGCCACTGTTTGACACCAACTCTTTTGATCCCCTCCAAAGCTAGAGG
AAAAGAGTGAGTGAGTTCACCACATACCACTGGCTTTGGTCTACGGTTGACACAACTCCT
CGACTAATTGGTCAAAATATCTTGTGACCACCAACTAGCAAGCACCAAATTGGATGTTCT
ATCAGCTTCTCCACATCCTAAAACAGTGAATACTGAATGCTGAGAGGCTTGCTGACTGCC
CAAAAAAAAACCTTGACAAAAAGTTAGTGGGGTAACTAACTAGGAGTAAATTCAATAGTA
GACCTTGAAAGAAACTTTGGCAAAGTCATCATAAATGCTCTTCACGTCTCATGTACTATG
TTATGGAATGGTCACATTTCTCTTTACATTAAAGCTAGTTCATGTAAAAAAGTTGAGGCC
AGTAAGAGTAGTTCAACTTTCAATATAATTCCACCTTCCCCCACCCCCTTGCTGGCCCAC
TTCTGTACGGAACACCAATCAGAATCTTTAGTTCATCTTAACACCAAAGCATCTCCACTT
AGTCACTTACTAGACTTCACATAGGAGGAAAAGTATGGAACTGGTGGTCCTCACACGTAC
TTGCCTTTCTTTTTTTACCTTGGTTCAAGTTTCATACTCTTTCATCTGGCTTCCTCACTC
TATTTTGGCACAACTAGTTTCTCCTCACAGGGATGGAAACTAACAAATGGGAAGGGAAGA
GAAGCATTAATGAAGCTGAAGAGGAAGAGGATGAACATGAAAGTGTTGAAGAGGACAGCA
AAAGGAAAAGGGTATTGACTCTCTCTGGTAGGAAGCTAGCTGGTGAAGGGTCGGCACATC
CTTCTTGCCAGGTCGATCAGTGCACTGCAAATATGGCAGATGCCAAGCCATACCATCGCC
GCCACAAGGTGTGTGAGTTCCATTCAAAGTCTCCAATAGTACTTATTAGTGGACTCCAGC
AGCGATTCTGTCAGCAATGTAGCAGGTAAGTAACCTCTATTTTCTGATGAACAACTCTAA
TTTTATCTGTGCCTTCCGAGTTCTATAGTGGCAATATCTTGGAAACCAATTATGTGCACT
CAACCAGTTTTTCTTAGATTAAAGTCACGAGGAACATTAATCAAAACATCAATTAGCCAA
TAAACAAAGAAGAAGGTAATTTAAGCTTCAGTGCTGATTCATTTTATGCAACATATTGGA
ATCCTAATATCAAGAACCAATACCAATAACATAGGCAAGAACTAACACATGGAGATACGA
AAGTACAACAGCAACAATCAATTTCATACAATATCCTATGCATATCATTTATTTAATCAT
AAACTGTGTGAAAAAGCAAAACTCAGCCTTTTAAATCGTGATATAACAATAAATCCAGGA
CACTACTGGATCTTCCAAATTAATCCATTGATATTTCTAGACTATAACTTTGAAATGTGG
TTATTAAGACCATGGCTACATCCAATTAAAAGATGGTCAATAACCTCTAGGTTTCCTTGT
TATGGAACAAAAGCCAAATCAAGCAATGATGATGATTTCTTCTTAGAATTAGGGCCCGTT
TGGATTGACTTAAAAAAAGTAGCTTTTAAGTCAAAAATAAAAAGTCAAACTGAAATGACT
TTTAAGTCAAAAAATAAAAAGTAGGAGGAGACCTACTTTTGGTTTTTGACTTATTTTAAG
TTATTTTTTATATGCCAAACACTTCCATAAGTTAAGTCAAAAACTGACTTAAAAGTAAGT
TTGACCAACTTTTAAGTCAATCCA