Microarray Probes on PGSC0003DMT400075156
Probe ID | Chip | Probe Sequence |
---|
CUST_52215_PI426222305 |
JHI_St_60k_v1 |
ATGAAGGCTGAATCGGAACCGGAAAAGGCACAGATGACGATATTCTATGCAGATTTACCA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400075156
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400075156 - Homology to Model Species (BLASTX to E-value < 1e-50)
Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
---|
Tomato (ITAG) | None | - | - | - | - | - |
TAIR PP10 |
AT1G19180.1 |
+3 |
1e-08 |
54 |
48/129 (37%) |
jasmonate-zim-domain protein 1 | chr1:6622312-6623271 FORWARD LENGTH=253 |
Transcript Sequence (780 bp)
>PGSC0003DMT400075156 780 pgsc_dm_v3.4
CTATAATCCTTCAACTTTACTTTTCATTTCATTCAAAAAAGAAAGAAGAAAAAATAGTAC
TATTACAAATGGCTTCATCGGAGATTGTGGATTCCGGGAGACATGCCGGTCAGAAATCGC
ATTTCTCTCATACATGTAATTTGTTGAGCCAATACTTGAAGGAGAAGAAAGGTTCTTTAG
GAGATCTCAGCCTTGATATACATCGCAATTTTGATTCAACTGGTTCTACTACTATGGATT
TGTTGCCAATGATTGAGAAATCTGGTGAGTCGGTTCAGAAATCGATGAATCTGTTCCGTC
AAGGTGCAATGAAGGCTGAATCGGAACCGGAAAAGGCACAGATGACGATATTCTATGCAG
ATTTACCAATTGCGAGAAGAGCATCACTAACAAGGTTTTTGGAGAAGAGAAAAGATAGGC
TGACTGCAAAAGTACCTTACTATAGAGAGGAAGCAGCTCCTAAGAAGGAAGAAAACAAGG
CGGCATGGCTGGGATTGGGTGGTCAATTTGCAGTGAAAACTGAGCAATACTAGTGGCTTT
AATTGCTTAGTAGAAGCCTAGATAATCAATTACTACAAGTTTAATCTTGGCTTCAACCCT
CATTGAACTCCATACTTAGATCTGACTATTATTATTATTATTATGATTTCTGTAATTAAA
ACCAGATATGGTTGTTCAATTCATCATCTCTCAAGTTTTCATGTGTTCGCAACAACAATT
TATCTGTCTATACTGTTTTCTTTTATGTTGCTTTGCTTTGATTGGAGATGAGAATATTAG