Microarray Probes on PGSC0003DMT400074985
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_9997_PI426222305 |
JHI_St_60k_v1 |
TGCTTTCCTTCAAGGATCATTGCAGGAAGAAGTCTATATGAATTTGATGTGAGGTCAAAA |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400074985
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400074985 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G60580.2 |
+2 |
9e-153 |
463 |
247/449 (55%) |
RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=494 |
Transcript Sequence (2776 bp)
>PGSC0003DMT400074985 2776 pgsc_dm_v3.4
TTTCTTTCTTTCTTTCTTTCTTTTTGCTTTAGAAATATTTATTATATACAAGTACCATCT
TGTTGTTCATATAAACAGTAGTGTTTTTCAGTTCTCAGGGGAAAAATACACACACCAGAA
CTGGGTCTTTTTTCATCTTCACATGATGAGGTGTGAACAGAAGGATAAATCAATGGCTGA
GGTGTATGATGAATATGTTAGAAGTAATGTTTGTGAAAGAGTTGCTATTCAAATCCCTCA
GGGTAAAAGTTCCTCAGGGATTACTGAAGAAAGTGAACATGCTAAGCAATGGAAGAGACC
AAATCTATTTGTGGAGATACCTTCCAAATCATCGGATGCCTCTAATCAAGAGTCTGTGCA
AGTTAAAATGCTTTCAGCACCCACGCCTACACCAAAAAGGGTGAATTTCCTTTTGACACC
TAGTCCTTCTAATTCGAGAGCAAACGCTTTTCCTAGTCCGTCATCATGCAGAGGCAAATC
ATCCATCAAGAGTCTTTTGCCAAGACTAAGCTTCAAATTGCGTAATATGAATTCAGATAC
AGAAAAGGCAACCTTACCAGATTCAGATACTTCGGCCATGGTGCCGCAAGAGAAGGTGTC
CATACCAAGGTCATGGTCATTCACTAAATTATTTACACCACGTGTGAAAAGGACGTCATC
GTTACCCGTTACACCAATTGATCATTCAAATCCAGAGTCTGCTAGTGGAAGTATCAGCAG
AGCTATGACATTTGGTCCAAAAGAAACACAACTGCGCATTTCTCGATCACTTTCTCTACC
GGTCATTAACAAAGATCGACGCACTAGGAGAGTTGAATCTTTCTTTCGAGTCATTCCTTC
AACCCCTCAGGGGAAGGATGGGGATTCCACAGTTCCAGCTACACCTCCAGCTAAAGTATC
TGAAGATGAAGAGCCAAATGGTGAAGATATACCTGAAGAGGAAGCTGTTTGTCGAATTTG
TCTGGTTGAATTATGTGAAGGTGGGGAGACACTCAAGATGGAATGCAGCTGCAAAGGTGA
ACTTGCTTTGGCTCACCAAGAATGTGCTTTCAAATGGTTCAGTGTAAAAGGTAACAGAAC
ATGTGACGTGTGCAAGCAAGAAGTTCGAAACCTGCCTGTCACACTTCGTCGCCTCCAAAG
TGCGAATGTGGGATCCAATAGTTTCCAGCACTTGGAAATAAACGGATACAGGGTATCACA
GGAACTACCAATTCTTGTCATTGTCAGCATGCTTGCCTACTTTTGCTTTCTTGAGCAGCT
TCTGGTCGGATCAATGGGTACAGGTGCAATAGCAATATCAGTTCCCTTTTCTTGTGTACT
AGGTTTGCTTTCGTCTTTGGCGTCATCAACCATGGTGAAGAGAAGGTTTGTTTGGGTTTA
TGCGTCGATTCAGTTCATCCTCGTGGTATTCTTTGCTCATATGTTCTACTCCTTGGTTCA
TGTACAAGCTGTTCTTTCAATTCTTCTATCAACATTTGCTGGCTTGGGGGTCGCAATGTG
TGGATGTTCCATACTTATCGAGTTCTTTAGATGGAAAAGGCGGAGACAAGCCGTGTTAGA
TCAACAACAGCAGAATTCCCAGCTGAATCAAACAGAAATATCGTCCCACATAAGTACTCG
TCAAGATTATCAATCGGATTTAGAAAATCCAGGGACAGTTAGTGGGAGCTAGGTAGTCAA
TAAAGCTATAGCAGCTTATAAGGCATTAAAAAAACACAGTTGTTGTGGGGAAATGGAATG
GCTTGTTGTATATATCTCGACGTTACTCACCCTCCACCGGGAAGTAGAAAAGTTCATTGT
ACTGTGAAAGCGTGGAAAGAAAGATACCGACACTTGACTATCATCCCTGTTTCAAAAGTT
GTTTGGCACTGCTCTTAATAGAACCAAACTACGTATCTTTGGATGTCTTTGATCATTTCC
TTGGTTGCGACCTTATGCAAATCATAATCTTGAGTCTCACTCTAAGACATGCATCTCCAT
TGGTTACTCCTCAAATCAAAGCGCCTATAAATTTTATTAACCTATGTTGAAAAAGATCTT
TTTCTCTCATCATGTTCAATTTGTGGAGTCTACATTTCCATGATCCTCGCATCCGTTGAC
ATCTTCCTTTGCCCATGTTTCATGGAATGTTGCATCAAATTATGCCACTCATTTCACACT
ACAAGGTCCCTCACCTGCAAGAAGGCCTTCACATTCACCCGTACCTTCACCTTCTTCAAA
TGTGGACACTGTCATTTCTTCTCCTCCGCGTAGAGAGTCTCCCCAAGGAAGTTCAGATCC
TTTACTGTCTTCTCCACCATGTCAAACATTTTTTCATATACAAAAAGGTCCTACGCATAA
CCATCCTATGACCACACTGTCTCAAAACAAATTTACAAGCCTAAACAAGCATTCACCGCA
ACAAAACATCCCATTAATTCATCAATTGAGCCATCATGTGTTACACAAGCTATTAAAGAT
CCTGAATGCAGAGCAACAATGTCAGAAGAATTTAATGCTCTTGTTAGAAATGGTACATAG
GAACTTGTCCCTTTTCAACTCAATTTAATGTCATTGGTTGTAAGTGGATTTTCAGGGTAG
TTAAAGACTTTCATCAAAGATTCAGGCTTGACTATCATAATAGATTTAGTCATGTTATTA
AAACAGCTACCATTAGAGTAGTTGGAAGTATTGCTTTGCAGCTTGGGTGGAAGATTAGGC
AACTTGATGTCAATAATGCTTTCCTTCAAGGATCATTGCAGGAAGAAGTCTATATGAATT
TGATGTGAGGTCAAAA
