Microarray Probes on PGSC0003DMT400074732
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_4_PI426222305 |
JHI_St_60k_v1 |
TTTCTATGATTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400074732
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400074732 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) |
Solyc01g058260.2 |
+1 |
0.0 |
900 |
453/500 (91%) |
genomic_reference:SL2.50ch01 gene_region:58770102-58774780 transcript_region:SL2.50ch01:58770102..58774780- go_terms:GO:0005515 functional_description:Poly(A) polymerase (AHRD V1 ***- Q56XM9_ARATH); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region |
| TAIR PP10 |
AT3G06560.1 |
+1 |
0.0 |
536 |
275/491 (56%) |
poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507 |
Transcript Sequence (2451 bp)
>PGSC0003DMT400074732 2451 pgsc_dm_v3.4
GCGCATCATAACACGTTTTCACCTCTAACCACACACACCAGGGACAAACAATTCTTCTTT
CTTTCCCCCGTTTTTCATTCACCATTTCCAAAATTTCACAGCACGAACAGAGAGATCACC
ATAATCCTTTCTTCATATTTTTCCCTTTACTAAACCCTTTTTGTTTTCTTCTCAATAAGG
GGTTTTTAGAAAATCAGTATCTCTAATAAGGGTTTTTGTTTGTTTCTTTTCCCTTAACCT
TTTCATACTTCATCTTCTTGAATTCCAATTGAAGATTTGTGTATGGAATTTGGGCATATT
GAAAGGCAACAATTGGTTGATCCTCGACATGTGAATACATATCTACCCAGATGGTCAATT
GGGTTGCGTCCAAACTCGAATCTTGATTATCAGGTAGGCCATTTTACCCCCCTACCCCCT
CTTGATGGGGTTTTGGGTTTTGGGGGAAACCCAGATGGGATTCTAAGAATGGAGATGGAA
AGGTCAATGTCACTCTTTCAGATTATGGGCGATGAAGGTTTAGTGCCTTCGCTAGAGGAG
GAAATGAAAAGGAGAAATGCTATTCACAAGCTCAAAAAGATAGTGAGGGAATGGGTTCAG
ACAGTGGCTTACCATCATGCACTTCCCAAAAGATACCTCAGGTTTGCCTCTGGCACAATA
TTGACATATGGATCATATGGTCTAGGAGTTCATAATTCGGAGTCTGATATTGATGCATTA
TGTGTTGGACCGTGCTTTGCAACAATAGAAGAAGACTTTTTCATTGTTCTGCGCAACATT
CTCGCGAGCAGACCAGAAGTATCAGATATCCACTGTGTCAAAGGTGCGAAGGTTCCTCTG
ATGAGATTCAAATTTGATGGGATCTCTATTGATCTTCCATATGCACGACTAAAAGTAATA
TCCATACCTGAGGATGTGGATGTATTCAATCCATTCTTCCTGAAGAATATTGATGACAAG
AGTTGGAAAAGTCTGTCTGGTGTTCGTGCAAATAGGAGAATTCTTCAACTTGTGCCAAAT
GTAGAGATATTCCAGGCAGTTCTGCGTTGTGTTAAACTATGGGCAAAGAAACGAGGAGTT
TATGGGAATTTGCTCGGATTCTTTGGAGGAGTTCATCTAGCAGTGCTTTCAGCATTCATC
TGTCAAAGGCATCCAACAGCCAGCTTGAGTGCACTTTTTTTTATTTTCTTCAAAACATTT
GCCTTTTGGCCTTGGCCGACTCCAGTAGTTTTACAAGATGGAGTTGCTTGGCCATTTATT
CCCACGGATAAAGTTTTGTGGATGCCAATCCAGTTACCATGTAGCCCATATCAATTTTGT
CATTCAAACATTGTGAGAAGTACATTTTTCAAAATCAAGAGTGAGTTCATGAGAGGGCAT
ATGCTGACTAAGGATATGTTAAGGCCAGAATTTGATTGGAACATCCTGTTTGAGCCCTTT
CCTTATCCAAGAAAATATGAGAAATTTGTCAAAATTTTCCTCTCAGCTTCTGATAAAGAT
GAGCTAGGTGACTGGGTGGGTTGTGTCAAATCACGCTTTCGCTGCCTAATTATCAAACTG
GAGGAGTTGCTGGGGTTTTGTGACCCCAACCCAACAGAGTATGCTGATGTTGATGCATCC
GAGCCCAATGCCGTTTTTTATTGGGGATTGCCACCTGCTATGACCGATATGATAAATATA
GGTCACGTGGAGGTAGAGTTCTTGAAGAGCACGAACAATGTATATCAAGGCCCAACTGGG
AAGCTGAAGTTATCAATTGTGCAAGCTGATCAGTTACCTTAAAAGGCCCACTTTGATAGT
GAGCTCCAGAGTGCAAAGCCATGTTGGAGGATTGTGAGGAGCAATCAGCGAATAGTTCCT
GCATACTACAAATACCAACCCATCTGTGTCAACGGATATTTGACCACAAATGCATGTCCC
GAGTACCCAAGTGCTGGGGGTTAGGCTGCTGCCGCCCCTTCTGTTGTTTTACACCTTCGT
CGTTTGGTCTTCCACAGAGTGAAAAGGTTTAACACAGTTTGTATTCGTGGTCAGTACAGA
GAAGAATGACGATTGTACATTTTGAGTTGTGTTACTTGTAAATCATCTCAGGGTGTAAAT
GCTTTTGCTCTTGAAAAACAGATTGAAGAAATGAATGCGTGTCCATGAAAAATGAGTCAT
GGCACATATCTTGTTATTTGATGGATCTAGTGTTGAGACCTGTATTATTTTGCTCCAGTC
TTGCAGTTGCTGCTTTACTAGCTTGTACTTGTCAAATTTATGGTAAAATAATCTCAATTT
ATGTATTGAACCTTTCTTTCTCCTCCTTCATTCACACCTTATGCTTTGGTGAGTAATGTA
ATAGGACAAGTAGTGCTATGGATGAGTGACGTTTGATCCATTTTTGGGGTATTTCTATGA
TTTCATACTGAGTTGAGCCTTTGTGCTATGTGTCCTTTTAATGTACTCCCC
