Microarray Probes on PGSC0003DMT400073584
| Probe ID | Chip | Probe Sequence |
|---|
| CUST_40821_PI426222305 |
JHI_St_60k_v1 |
GATTTATCCAGCAAGTGGCAGTATGGTGGCAGAGTCTGTGGAAAGAAGAAATAAGAACTG |
Link to Spud DB Genome Browser for Transcript PGSC0003DMT400073584
Click here to view details at Spud DB Genome Browser (opens in new window)
Source Transcript PGSC0003DMT400073584 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Tomato (ITAG) | None | - | - | - | - | - |
| TAIR PP10 |
AT5G10250.1 |
+3 |
1e-94 |
307 |
173/542 (32%) |
Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607 |
Transcript Sequence (1980 bp)
>PGSC0003DMT400073584 1980 pgsc_dm_v3.4
TCTTAAAAATTCAATGCATGAAAGGGACACTATGGTGATGGAATTATATAATATAGCAAA
GAAGAATAGACTGTATAGTTCAGAACAGAGGAAACTAAAGGGATAGTATACCTGCTGAAG
ATATGGTGAAAGAAAATCCAGTAACTGGTGAATCTATATTTATCGAAAAGAGAAATCACT
GTGTGATTTATCCAGCAAGTGGCAGTATGGTGGCAGAGTCTGTGGAAAGAAGAAATAAGA
ACTGGTTTGTCCAAACAAAAATACCAAGTGATTTGATAGTAGAAATTAGAGACCAAAGCT
TCCACTTGCATAAGCTTTCCGTGGTTTCAAGAAGTGGATACCTTAACAGATTGGTATTCG
AAAGGAATGGGAACAACTATACTAGAGTTCAGATTGATACAATTCCTGGTGGGGCTAAAA
TCTTTGAATTAGTAGTGAAATTTTGTTATGGACTGAAGATCAAAGCTACAGCTTCAAATG
TTGCCCCACTGTATTGTGCTGCTCATTTCTTGGAAATGAATGATGAACTTTACCAAGGAA
ATCTAATTTCTAAAGCAGAGGCGTTCCTTAGCTACGTAATCCTTTCTTCATGGAAAGACA
CATTTAGGATCTTGAAAAGCTGTGAATCAGTTTCGTCATGGTCTAAAGACTTGCACATTG
TCAAACGTTGCACGGAAGCCATTTCTTGGAAAGCTTGCTCAGAGACTGGAGTGAGTAGTA
TAGGAGACAATGAAGTGTTAGTGAATGTTACAGCAGATGATACAACCAAGTTGGTGAAGT
TGTGTGGCAATTGGTTTTTCCATGATTTTTCATCCCTTCGGATAGATCATTTTATCGAAG
TAATTTCATTGATCAAAAAGAGAAAGATTAAGCCAGAGCTTGTGGGGTCATGTATAGCTC
ACTGGACAAAGAAGTGGATTTCTCAAATCACAGTTTCACAAGAGAAATCGAAAGATCAAG
AATTGTCCATCCAGCTACAAAGAGTGACAACTGAATGTTTGATAAGGGTGCTTCCTGCTG
AAGAAGACTCAGTTTCCAGCAATTTTCTGCTTCATCTTTACAAGATTGGGCTAATTATGA
ATATCAATCCCAAATTAAAAGATCAGCTCAAGACAAGAATAGCTCTCATGATGGAAAAAT
GCAGTGCTAAAGACCTTCTAGTCAGGAACAGTACAACTCTTTTCGACGTGGATATTGTTG
TTCAAGTGGTAGAAGCTTATGTTTCTCTTGCATCAAATAATCCCAAGTCAAGAATGTGTG
TTGTCGGGAGGCTAGTGAACGACTACCTCGCCCTCATAGCGAGGGATGAGAACCTTGTAG
CAAGAAGCTTTGACTCTCTTGTAAATGCATTGCCAAAAGAAGCAAGATTTTGTGATGACA
ACCTATATAGGTCCATAGACATGTACCTCAAGGAACATCCTGACCTAACAGAAGAAGAAA
GAAGAAGCATATGCAGAAAAATGGAGTACCATAAGTTATCACAGGAAGCGCAAATACATG
CCTTGAAGAATGATAGGCTGCCAGATAACATCAGGACACAATTTATACTTCTTGAGCAAG
TCAATATGATGAGGTTACTAACTTCAGATGGTTCAAGTTACCAGAGAACTAAGTCACAGA
CCATAATGAAAGTCAGCAGCGGTTTACGCAAGAGTTGGATGAATTCCTCCCAGACAGAAA
TGAAAGCGATAAAACAAGAGCTTGAGATGTTAAAGGCTCAAGTTGGTGAACTGCAACAAC
GTAGGATGGAACTTCAGCAGCGAACAAAGAAAGTTGTCTTTTGTTAGTTTATTATGCTTC
ATGTCTGTTTAGTGAATTGAAAATTTGGACAATGTGGTTTCAGTTTGTTGAACTCAAGCT
GGTGTGGTTGATGAGATTTGCCCTTATTAGTCTGGTAGTAGGAATAGTTATTTAACATTG
AACTGGTACCAGAGTCTATGTTTTTTAAAGGCAGATTGTTTAAATGATATGTCAATGGAC
